Variant report

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:87793956..87798150-chr6:87800009..87803465,4	K562	blood:
2	chr6:87789226..87790732-chr6:87794986..87797378,2	MCF-7	breast:

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs11753367	0.88[CEU][hapmap];0.81[EUR][1000 genomes]
rs11968873	0.82[EUR][1000 genomes]
rs13218179	0.83[EUR][1000 genomes]
rs2025487	0.83[AMR][1000 genomes];0.91[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2025488	0.84[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs4986869	0.83[EUR][1000 genomes]
rs6902324	0.80[EUR][1000 genomes]
rs9294364	0.89[CEU][hapmap];0.81[EUR][1000 genomes]
rs9294365	0.88[CEU][hapmap];0.83[EUR][1000 genomes]
rs9342103	0.88[CEU][hapmap]
rs9344670	0.81[EUR][1000 genomes]
rs9344671	0.81[EUR][1000 genomes]
rs9351112	0.81[EUR][1000 genomes]
rs9353447	0.81[EUR][1000 genomes]
rs9359727	0.88[CEU][hapmap];0.80[EUR][1000 genomes]
rs9359728	0.81[EUR][1000 genomes]
rs9362385	0.81[EUR][1000 genomes]
rs9362386	0.81[EUR][1000 genomes]
rs9444466	0.81[EUR][1000 genomes]
rs9444467	0.81[EUR][1000 genomes]
rs9444468	0.80[EUR][1000 genomes]
rs9444472	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs9444473	0.84[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs9450611	0.80[EUR][1000 genomes]
rs9450612	0.81[EUR][1000 genomes]
rs9450613	0.88[CEU][hapmap];0.81[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1024751	chr6:87433199-87908721	Flanking Active TSS Active TSS Enhancers ZNF genes & repeats Weak transcription Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases
2	nsv5385	chr6:87781015-87803663	Enhancers Weak transcription Active TSS Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	esv1002835	chr6:87792224-87800627	Enhancers Weak transcription Active TSS Strong transcription	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:87793000-87798200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr6:87793200-87797600	Weak transcription	GM12878-XiMat	blood
3	chr6:87794000-87799800	Strong transcription	Placenta	Placenta

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