Variant report

Variant	rs66491866
Chromosome Location	chr3:21741615-21741616
allele	A/G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 39 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:34)

rs_ID	r²[population]
rs10510515	0.91[EUR][1000 genomes]
rs10510516	0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11129015	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11710740	0.93[EUR][1000 genomes]
rs11718610	0.91[EUR][1000 genomes]
rs12152283	0.91[EUR][1000 genomes]
rs17009232	0.91[EUR][1000 genomes]
rs17009250	0.91[EUR][1000 genomes]
rs17009256	0.91[EUR][1000 genomes]
rs17009261	0.91[EUR][1000 genomes]
rs17009271	0.91[EUR][1000 genomes]
rs55877448	0.96[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs73037288	0.91[EUR][1000 genomes]
rs73040075	0.91[EUR][1000 genomes]
rs73040090	0.91[EUR][1000 genomes]
rs73040094	0.91[EUR][1000 genomes]
rs73042114	0.87[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs73042122	0.93[EUR][1000 genomes]
rs73042130	0.93[EUR][1000 genomes]
rs73042147	1.00[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs73042185	0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7615960	0.93[EUR][1000 genomes]
rs9310651	0.91[EUR][1000 genomes]
rs9310652	0.91[EUR][1000 genomes]
rs9310653	0.91[EUR][1000 genomes]
rs9853494	0.87[EUR][1000 genomes]
rs9858604	0.91[EUR][1000 genomes]
rs9859103	0.91[EUR][1000 genomes]
rs9859423	0.91[EUR][1000 genomes]
rs9863531	0.91[EUR][1000 genomes]
rs9870622	0.91[EUR][1000 genomes]
rs9871442	0.91[EUR][1000 genomes]
rs9876514	0.91[EUR][1000 genomes]
rs9883454	0.91[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv534005	chr3:21387588-22003293	Enhancers Flanking Bivalent TSS/Enh Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer Strong transcription Bivalent/Poised TSS Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv1010460	chr3:21516810-21839871	Enhancers Bivalent/Poised TSS Weak transcription Flanking Active TSS Genic enhancers Active TSS Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv834631	chr3:21612283-21763887	Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Active TSS Genic enhancers Strong transcription Bivalent Enhancer	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
4	nsv1007048	chr3:21666807-21865229	Weak transcription Active TSS Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Strong transcription	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
5	nsv536516	chr3:21666807-21865229	Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Weak transcription Bivalent/Poised TSS Strong transcription Active TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:21724600-21746400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr3:21732800-21757600	Weak transcription	Fetal Muscle Leg	muscle
3	chr3:21737800-21753600	Weak transcription	Aorta	Aorta
4	chr3:21741600-21743400	Weak transcription	Fetal Muscle Trunk	muscle

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