Variant report

Variant	rs664998
Chromosome Location	chr1:76645490-76645491
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs2952434	1.00[EUR][1000 genomes]
rs3011988	1.00[EUR][1000 genomes]
rs419725	0.85[YRI][hapmap];0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs439624	0.89[YRI][hapmap];0.92[AFR][1000 genomes];0.86[AMR][1000 genomes]
rs519835	0.85[AMR][1000 genomes]
rs56077995	1.00[EUR][1000 genomes]
rs56160304	1.00[EUR][1000 genomes]
rs56309855	1.00[EUR][1000 genomes]
rs59073776	1.00[EUR][1000 genomes]
rs60246438	1.00[EUR][1000 genomes]
rs61217794	1.00[EUR][1000 genomes]
rs74092509	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv870621	chr1:76620313-76997071	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:76619800-76646400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
2	chr1:76636000-76646600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr1:76636600-76652800	Weak transcription	Primary B cells from cord blood	blood
4	chr1:76643800-76651800	Weak transcription	Fetal Kidney	kidney
5	chr1:76644200-76646200	Weak transcription	Brain Hippocampus Middle	brain
6	chr1:76644400-76651000	Weak transcription	Fetal Lung	lung
7	chr1:76644800-76653200	Weak transcription	H9 Cell Line	embryonic stem cell
8	chr1:76645400-76652600	Weak transcription	HUVEC	blood vessel

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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