Variant report

Variant	rs2952434
Chromosome Location	chr1:76653364-76653365
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs3011988	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs401290	0.85[AFR][1000 genomes]
rs419725	1.00[EUR][1000 genomes]
rs425877	0.91[AFR][1000 genomes]
rs453606	0.86[AFR][1000 genomes]
rs56077995	1.00[EUR][1000 genomes]
rs56160304	1.00[EUR][1000 genomes]
rs56309855	1.00[EUR][1000 genomes]
rs59073776	1.00[EUR][1000 genomes]
rs60246438	1.00[EUR][1000 genomes]
rs61217794	1.00[EUR][1000 genomes]
rs664998	1.00[EUR][1000 genomes]
rs74092509	1.00[EUR][1000 genomes]
rs7534199	0.84[AFR][1000 genomes];0.81[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv870621	chr1:76620313-76997071	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:76646600-76658000	Weak transcription	Fetal Stomach	stomach
2	chr1:76647000-76665600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
3	chr1:76651800-76653600	Enhancers	Brain Anterior Caudate	brain
4	chr1:76652000-76654600	Weak transcription	Aorta	Aorta
5	chr1:76652400-76653600	Enhancers	Fetal Brain Male	brain
6	chr1:76652400-76654800	Weak transcription	Brain Inferior Temporal Lobe	brain
7	chr1:76652600-76653400	Enhancers	Brain Cingulate Gyrus	brain
8	chr1:76652600-76653600	Enhancers	Brain Angular Gyrus	brain
9	chr1:76653000-76654600	Weak transcription	Brain Hippocampus Middle	brain
10	chr1:76653200-76653600	ZNF genes & repeats	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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