Variant report

Variant	rs7534199
Chromosome Location	chr1:76653934-76653935
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 3 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs2952434	0.84[AFR][1000 genomes];0.81[AMR][1000 genomes]
rs3011988	0.84[AFR][1000 genomes];0.81[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv870621	chr1:76620313-76997071	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:76646600-76658000	Weak transcription	Fetal Stomach	stomach
2	chr1:76647000-76665600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
3	chr1:76652000-76654600	Weak transcription	Aorta	Aorta
4	chr1:76652400-76654800	Weak transcription	Brain Inferior Temporal Lobe	brain
5	chr1:76653000-76654600	Weak transcription	Brain Hippocampus Middle	brain
6	chr1:76653600-76654600	Weak transcription	Brain Angular Gyrus	brain
7	chr1:76653600-76654600	Weak transcription	Brain Anterior Caudate	brain

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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