Variant report

Variant	rs6651067
Chromosome Location	chr7:27495299-27495300
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs10268902	0.86[EUR][1000 genomes]
rs10269877	0.80[JPT][hapmap]
rs10271302	0.85[JPT][hapmap]
rs10280925	0.87[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap];0.89[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1034660	0.86[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10951164	0.90[CHB][hapmap];0.95[JPT][hapmap]
rs12700805	0.90[CHB][hapmap];0.81[JPT][hapmap];0.80[ASN][1000 genomes]
rs17439381	0.85[ASN][1000 genomes]
rs1806799	0.99[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1966331	0.82[EUR][1000 genomes]
rs34226948	0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs3846999	0.80[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6951650	0.96[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs6963552	0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs757143	0.95[EUR][1000 genomes];0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830930	chr7:27395838-27587355	Weak transcription Enhancers Strong transcription ZNF genes & repeats Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	17 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:27494000-27496200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr7:27494200-27496800	Weak transcription	NH-A	brain
3	chr7:27494200-27497000	Weak transcription	Osteobl	bone
4	chr7:27494200-27498400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
5	chr7:27494200-27498400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
6	chr7:27494200-27498400	Weak transcription	Adipose Nuclei	Adipose
7	chr7:27494200-27498400	Weak transcription	NHLF	lung
8	chr7:27494200-27498600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
9	chr7:27494400-27498600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
10	chr7:27494400-27498600	Weak transcription	NHDF-Ad	bronchial
11	chr7:27494600-27497000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links