Variant report
| Variant | rs10951164 |
|---|---|
| Chromosome Location | chr7:27443337-27443338 |
| allele | C/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | 7:27238414-27242313..7:27439194-27449722 | K562 | blood: |
| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| ENSG00000106031 | Chromatin interaction |
| ENSG00000243766 | Chromatin interaction |
rSNPs within LD-proxies of this variant (count:19)
| rs_ID | r2[population] |
|---|---|
| rs10252971 | 0.94[EUR][1000 genomes] |
| rs10268902 | 1.00[ASN][1000 genomes] |
| rs10271302 | 0.81[JPT][hapmap] |
| rs10280925 | 0.95[CHB][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes] |
| rs1034660 | 0.89[ASN][1000 genomes] |
| rs12700805 | 1.00[CHB][hapmap];0.85[JPT][hapmap];0.88[ASN][1000 genomes] |
| rs17439381 | 0.93[ASN][1000 genomes] |
| rs1966331 | 0.83[ASN][1000 genomes] |
| rs2074337 | 0.95[EUR][1000 genomes] |
| rs2074338 | 0.95[EUR][1000 genomes] |
| rs34226948 | 0.86[ASN][1000 genomes] |
| rs3846999 | 0.86[ASN][1000 genomes] |
| rs4719891 | 0.88[EUR][1000 genomes] |
| rs6953463 | 0.93[EUR][1000 genomes] |
| rs6957441 | 0.93[CEU][hapmap];0.94[EUR][1000 genomes] |
| rs6957649 | 0.93[CEU][hapmap];0.94[EUR][1000 genomes] |
| rs6963552 | 0.90[ASN][1000 genomes] |
| rs757143 | 0.82[ASN][1000 genomes] |
| rs7798437 | 0.95[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv531024 | chr7:27194426-27461954 | Enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Weak transcription Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats Strong transcription | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNAmiRNA target site | 148 gene(s) | inside rSNPs | diseases |
| 2 | nsv830930 | chr7:27395838-27587355 | Weak transcription Enhancers Strong transcription ZNF genes & repeats Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 17 gene(s) | inside rSNPs | diseases |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
