Variant report

Variant	rs6957649
Chromosome Location	chr7:27440122-27440123
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	7:27238414-27242313..7:27439194-27449722	K562	blood:

Variant related genes	Relation type
ENSG00000243766	Chromatin interaction
ENSG00000106031	Chromatin interaction

Extended variants
information (count: 37 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:34)

rs_ID	r²[population]
rs10232941	0.88[ASN][1000 genomes]
rs10252971	0.94[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10268859	0.87[ASN][1000 genomes]
rs10951164	0.93[CEU][hapmap];0.94[EUR][1000 genomes]
rs10951165	1.00[CHB][hapmap];0.87[ASN][1000 genomes]
rs11520770	0.82[CHB][hapmap]
rs11563380	1.00[CHB][hapmap];0.90[ASN][1000 genomes]
rs11563567	1.00[CHB][hapmap];0.88[ASN][1000 genomes]
rs11978918	1.00[CHB][hapmap];0.86[CHD][hapmap];0.90[ASN][1000 genomes]
rs12667419	0.89[ASN][1000 genomes]
rs12668112	0.83[ASN][1000 genomes]
rs12672272	0.87[ASN][1000 genomes]
rs17429361	0.91[CHB][hapmap]
rs17429641	1.00[CHB][hapmap];0.90[ASN][1000 genomes]
rs17429648	1.00[CHB][hapmap];0.90[ASN][1000 genomes]
rs17439000	0.91[CHB][hapmap]
rs17439221	1.00[CHB][hapmap];0.90[ASN][1000 genomes]
rs17439235	1.00[CHB][hapmap];0.90[ASN][1000 genomes]
rs17439374	0.86[ASN][1000 genomes]
rs1985530	0.81[AMR][1000 genomes]
rs2074336	0.90[ASN][1000 genomes]
rs2074337	0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2074338	0.97[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2893286	0.87[ASN][1000 genomes]
rs4298409	1.00[CHB][hapmap];0.86[CHD][hapmap];0.90[ASN][1000 genomes]
rs4470906	1.00[CHB][hapmap];0.91[CHD][hapmap];0.88[ASN][1000 genomes]
rs4529360	0.87[ASN][1000 genomes]
rs4719891	0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs58842477	0.85[ASN][1000 genomes]
rs6953463	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6957441	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7798437	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs929242	1.00[CHB][hapmap];0.86[ASN][1000 genomes]
rs929243	0.91[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv531024	chr7:27194426-27461954	Enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Weak transcription Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	148 gene(s)	inside rSNPs	diseases
2	nsv830930	chr7:27395838-27587355	Weak transcription Enhancers Strong transcription ZNF genes & repeats Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	17 gene(s)	inside rSNPs	diseases
3	nsv437543	chr7:27437695-27440187	Enhancers Weak transcription Bivalent Enhancer	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:27439000-27440200	Enhancers	Spleen	Spleen
2	chr7:27439200-27440200	Enhancers	Primary hematopoietic stem cells short term culture	blood
3	chr7:27439200-27440200	Enhancers	Placenta	Placenta
4	chr7:27439400-27440200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
5	chr7:27439400-27440400	Enhancers	Primary monocytes fromperipheralblood	blood
6	chr7:27439400-27440400	Enhancers	Monocytes-CD14+_RO01746	blood
7	chr7:27439600-27440200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
8	chr7:27439800-27440200	Enhancers	HUVEC	blood vessel
9	chr7:27440000-27442800	Weak transcription	Fetal Kidney	kidney

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links