Variant report

Variant	rs7798437
Chromosome Location	chr7:27437563-27437564
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 33 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs10232941	0.89[ASN][1000 genomes]
rs10252971	0.80[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10268859	0.89[ASN][1000 genomes]
rs10951164	0.93[CEU][hapmap];0.95[EUR][1000 genomes]
rs10951165	0.89[ASN][1000 genomes]
rs11563380	0.91[ASN][1000 genomes]
rs11563567	0.89[ASN][1000 genomes]
rs11978918	0.91[ASN][1000 genomes]
rs12667419	0.90[ASN][1000 genomes]
rs12668112	0.84[ASN][1000 genomes]
rs12672272	0.89[ASN][1000 genomes]
rs17429641	0.91[ASN][1000 genomes]
rs17429648	0.91[ASN][1000 genomes]
rs17439221	0.91[ASN][1000 genomes]
rs17439235	0.91[ASN][1000 genomes]
rs17439374	0.87[ASN][1000 genomes]
rs1985530	0.81[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs2074336	0.91[ASN][1000 genomes]
rs2074337	1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2074338	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2893286	0.89[ASN][1000 genomes]
rs4298409	0.91[ASN][1000 genomes]
rs4470906	0.89[ASN][1000 genomes]
rs4529360	0.88[ASN][1000 genomes]
rs4719891	0.89[AFR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs58842477	0.86[ASN][1000 genomes]
rs6953463	0.91[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6957441	1.00[CEU][hapmap];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6957649	1.00[CEU][hapmap];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs929242	0.87[ASN][1000 genomes]
rs929243	0.90[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv531024	chr7:27194426-27461954	Enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Weak transcription Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	148 gene(s)	inside rSNPs	diseases
2	nsv830930	chr7:27395838-27587355	Weak transcription Enhancers Strong transcription ZNF genes & repeats Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	17 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:27437200-27437600	Enhancers	Fetal Lung	lung
2	chr7:27437200-27437600	Weak transcription	Ovary	ovary

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