Variant report
| Variant | rs4529360 |
|---|---|
| Chromosome Location | chr7:27445059-27445060 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:2)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:2 , 50 per page) page:
1
| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| ENSG00000243766 | Chromatin interaction |
| ENSG00000106031 | Chromatin interaction |
rSNPs within LD-proxies of this variant (count:30)
| rs_ID | r2[population] |
|---|---|
| rs10232941 | 0.92[ASN][1000 genomes] |
| rs10252971 | 0.87[ASN][1000 genomes] |
| rs10268859 | 0.91[ASN][1000 genomes] |
| rs10951165 | 0.91[ASN][1000 genomes] |
| rs11563380 | 0.94[ASN][1000 genomes] |
| rs11563567 | 0.92[ASN][1000 genomes] |
| rs11978918 | 0.94[ASN][1000 genomes] |
| rs12667419 | 0.92[ASN][1000 genomes] |
| rs12668112 | 0.93[ASN][1000 genomes] |
| rs12672272 | 0.91[ASN][1000 genomes] |
| rs17429641 | 0.94[ASN][1000 genomes] |
| rs17429648 | 0.94[ASN][1000 genomes] |
| rs17439221 | 0.94[ASN][1000 genomes] |
| rs17439235 | 0.94[ASN][1000 genomes] |
| rs17439374 | 0.90[ASN][1000 genomes] |
| rs1985529 | 0.82[ASN][1000 genomes] |
| rs2074336 | 0.94[ASN][1000 genomes] |
| rs2074337 | 0.87[ASN][1000 genomes] |
| rs2074338 | 0.87[ASN][1000 genomes] |
| rs2893286 | 0.91[ASN][1000 genomes] |
| rs4298409 | 0.94[ASN][1000 genomes] |
| rs4470906 | 0.92[ASN][1000 genomes] |
| rs4719891 | 0.84[ASN][1000 genomes] |
| rs58842477 | 0.88[ASN][1000 genomes] |
| rs6953463 | 0.86[ASN][1000 genomes] |
| rs6957441 | 0.87[ASN][1000 genomes] |
| rs6957649 | 0.87[ASN][1000 genomes] |
| rs7798437 | 0.88[ASN][1000 genomes] |
| rs929242 | 0.90[ASN][1000 genomes] |
| rs929243 | 0.89[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv531024 | chr7:27194426-27461954 | Enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Weak transcription Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats Strong transcription | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNAmiRNA target site | 148 gene(s) | inside rSNPs | diseases |
| 2 | nsv830930 | chr7:27395838-27587355 | Weak transcription Enhancers Strong transcription ZNF genes & repeats Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 17 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr7:27444800-27458000 | Weak transcription | Pancreas | Pancrea |
| 2 | chr7:27444800-27458000 | Weak transcription | Stomach Mucosa | stomach |
