Variant report

Variant	rs17429361
Chromosome Location	chr7:27415715-27415716
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	7:27238414-27242313..7:27414540-27418435	K562	blood:
2	chr7:27224860..27227689-chr7:27414517..27416467,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000106031	Chromatin interaction
ENSG00000243766	Chromatin interaction
ENSG00000240990	Chromatin interaction

Extended variants
information (count: 29 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs1007862	0.82[ASN][1000 genomes]
rs10245801	0.82[CHB][hapmap];0.84[AMR][1000 genomes]
rs10951165	0.91[CHB][hapmap]
rs11520770	1.00[CEU][hapmap];0.92[CHB][hapmap];0.95[JPT][hapmap];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11563321	0.86[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11563380	0.91[CHB][hapmap];0.83[JPT][hapmap]
rs11563567	0.91[CHB][hapmap];0.83[JPT][hapmap]
rs11563971	0.82[CHB][hapmap];0.82[JPT][hapmap];0.85[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs11563976	0.82[CHB][hapmap]
rs11978918	0.91[CHB][hapmap];0.86[JPT][hapmap]
rs12674312	0.81[AMR][1000 genomes]
rs17429177	0.83[CHB][hapmap]
rs17429249	0.86[AMR][1000 genomes]
rs17429641	0.91[CHB][hapmap];0.83[JPT][hapmap]
rs17429648	0.91[CHB][hapmap];0.83[JPT][hapmap]
rs17439000	1.00[CEU][hapmap];1.00[CHB][hapmap];0.91[JPT][hapmap];0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs17439221	0.91[CHB][hapmap];0.83[JPT][hapmap]
rs17439235	0.91[CHB][hapmap];0.83[JPT][hapmap]
rs2003460	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2106926	0.89[CEU][hapmap];0.91[EUR][1000 genomes]
rs4298409	0.91[CHB][hapmap];0.86[JPT][hapmap]
rs4357199	0.90[CHB][hapmap];0.81[JPT][hapmap];0.87[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs4470906	0.91[CHB][hapmap];0.86[JPT][hapmap]
rs6957441	0.91[CHB][hapmap]
rs6957649	0.91[CHB][hapmap]
rs929242	0.91[CHB][hapmap]
rs9332393	0.82[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv531024	chr7:27194426-27461954	Enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Weak transcription Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	148 gene(s)	inside rSNPs	diseases
2	nsv830930	chr7:27395838-27587355	Weak transcription Enhancers Strong transcription ZNF genes & repeats Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	17 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:24 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:27412600-27416000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
2	chr7:27412600-27416600	Weak transcription	Primary hematopoietic stem cells	blood
3	chr7:27412600-27416600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
4	chr7:27414200-27416400	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
5	chr7:27414200-27416400	Enhancers	iPS-18 Cell Line	embryonic stem cell
6	chr7:27414200-27416600	Enhancers	ES-I3 Cell Line	embryonic stem cell
7	chr7:27414400-27416400	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
8	chr7:27414800-27416400	Enhancers	HUES6 Cell Line	embryonic stem cell
9	chr7:27414800-27416400	Enhancers	HUES64 Cell Line	embryonic stem cell
10	chr7:27414800-27416600	Enhancers	iPS-20b Cell Line	embryonic stem cell
11	chr7:27415000-27416000	Enhancers	A549	lung
12	chr7:27415000-27416400	Enhancers	H9 Cell Line	embryonic stem cell
13	chr7:27415000-27416400	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
14	chr7:27415200-27416000	Enhancers	iPS-15b Cell Line	embryonic stem cell
15	chr7:27415200-27416000	Enhancers	Breast Myoepithelial Primary Cells	Breast
16	chr7:27415200-27416000	Weak transcription	Right Atrium	heart
17	chr7:27415200-27416400	Enhancers	Colon Smooth Muscle	Colon
18	chr7:27415200-27416600	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
19	chr7:27415400-27416000	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
20	chr7:27415400-27416200	Enhancers	HUES48 Cell Line	embryonic stem cell
21	chr7:27415600-27415800	Active TSS	ES-WA7 Cell Line	embryonic stem cell
22	chr7:27415600-27416000	Bivalent Enhancer	Fetal Muscle Leg	muscle
23	chr7:27415600-27416400	Enhancers	H1 Cell Line	embryonic stem cell
24	chr7:27415600-27416400	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell

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