Variant report

Variant	rs11563971
Chromosome Location	chr7:27408972-27408973
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr7:27400161..27403429-chr7:27407565..27409955,3	MCF-7	breast:
2	chr7:27400989..27404495-chr7:27408485..27412561,4	K562	blood:
3	chr7:27402338..27404495-chr7:27407726..27411327,5	K562	blood:
4	chr7:27405757..27408432-chr7:27408918..27411728,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000224322	Chromatin interaction

Extended variants
information (count: 47 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:44)

rs_ID	r²[population]
rs1007862	0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10155834	0.87[CHB][hapmap]
rs10240892	0.84[ASN][1000 genomes]
rs10245801	0.94[CEU][hapmap];1.00[CHB][hapmap];0.86[JPT][hapmap];0.81[AFR][1000 genomes];0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10275933	0.80[CEU][hapmap];0.86[CHB][hapmap];0.81[EUR][1000 genomes]
rs10951165	0.81[JPT][hapmap]
rs11520770	0.82[CHB][hapmap];0.85[JPT][hapmap];0.84[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs11563380	0.86[JPT][hapmap]
rs11563447	0.94[CEU][hapmap];0.96[EUR][1000 genomes]
rs11563567	0.86[JPT][hapmap]
rs11563574	0.94[CEU][hapmap];0.96[EUR][1000 genomes]
rs11563973	0.88[CEU][hapmap];0.91[TSI][hapmap];0.96[EUR][1000 genomes]
rs11563975	0.94[CEU][hapmap];0.82[CHB][hapmap];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11563976	0.94[CEU][hapmap];1.00[CHB][hapmap];0.95[CHD][hapmap];1.00[GIH][hapmap];0.86[JPT][hapmap];0.94[TSI][hapmap];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11978918	0.86[JPT][hapmap]
rs12674312	0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1547943	0.82[CEU][hapmap];0.86[CHB][hapmap];0.82[EUR][1000 genomes]
rs17429177	0.94[CEU][hapmap];1.00[CHB][hapmap];0.91[JPT][hapmap];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs17429249	1.00[CEU][hapmap];0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs17429270	0.94[CEU][hapmap];0.96[EUR][1000 genomes]
rs17429361	0.82[CHB][hapmap];0.82[JPT][hapmap];0.85[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs17429641	0.86[JPT][hapmap]
rs17429648	0.86[JPT][hapmap]
rs17439000	0.82[CHB][hapmap];0.82[JPT][hapmap];0.84[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs17439221	0.86[JPT][hapmap]
rs17439235	0.86[JPT][hapmap]
rs1990123	0.87[CHB][hapmap]
rs2003460	0.82[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs2106926	0.84[EUR][1000 genomes]
rs4298409	0.86[JPT][hapmap]
rs4357199	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4470906	0.86[JPT][hapmap]
rs4719886	0.88[CEU][hapmap];0.83[TSI][hapmap]
rs4719887	0.85[CHB][hapmap]
rs4719889	0.82[EUR][1000 genomes]
rs4722689	0.83[CEU][hapmap];0.86[CHB][hapmap];0.83[CHD][hapmap];0.82[EUR][1000 genomes]
rs4722691	0.82[ASN][1000 genomes]
rs6945955	0.87[CHB][hapmap]
rs6971228	0.81[ASN][1000 genomes]
rs6978314	0.82[EUR][1000 genomes]
rs722562	0.81[ASN][1000 genomes]
rs722563	0.87[CEU][hapmap];0.86[CHB][hapmap];0.80[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs929242	0.81[JPT][hapmap]
rs9332393	0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv531024	chr7:27194426-27461954	Enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Weak transcription Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	148 gene(s)	inside rSNPs	diseases
2	nsv830930	chr7:27395838-27587355	Weak transcription Enhancers Strong transcription ZNF genes & repeats Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	17 gene(s)	inside rSNPs	diseases
3	esv3340965	chr7:27406477-27408975	Weak transcription Enhancers Genic enhancers ZNF genes & repeats Bivalent Enhancer	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:27404200-27411800	Weak transcription	K562	blood
2	chr7:27404800-27415000	Weak transcription	Right Atrium	heart
3	chr7:27407800-27412000	Weak transcription	Spleen	Spleen
4	chr7:27408000-27409800	Weak transcription	Pancreas	Pancrea
5	chr7:27408000-27411600	Weak transcription	Fetal Kidney	kidney
6	chr7:27408200-27411600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
7	chr7:27408200-27411600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived

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