Variant report

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	GATA3	chr7:27373123-27373492	T-47D	breast:	n/a	n/a
2	MYC	chr7:27373045-27373364	MCF10A-Er-Src	breast:	n/a	n/a
3	STAT3	chr7:27373131-27373231	MCF10A-Er-Src	breast:	n/a	n/a
4	FOS	chr7:27373078-27373378	MCF10A-Er-Src	breast:	n/a	n/a
5	GATA3	chr7:27373082-27373485	MCF-7	breast:	n/a	n/a
6	FOS	chr7:27373021-27373346	MCF10A-Er-Src	breast:	n/a	n/a
7	STAT3	chr7:27373064-27373298	MCF10A-Er-Src	breast:	n/a	n/a

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:27362143..27365035-chr7:27372640..27375053,2	MCF-7	breast:

Variant related genes	Relation type
HNRNPA1P73	TF binding region

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs10155834	1.00[CEU][hapmap];0.85[CHB][hapmap];0.81[JPT][hapmap]
rs10245801	0.85[CHB][hapmap]
rs10275933	0.86[CHB][hapmap];0.84[JPT][hapmap];0.94[ASN][1000 genomes]
rs11563971	0.85[CHB][hapmap]
rs11563976	0.85[CHB][hapmap]
rs11563996	1.00[YRI][hapmap]
rs1547943	0.86[CHB][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs17428890	1.00[YRI][hapmap]
rs17429177	0.86[CHB][hapmap]
rs17438605	0.96[ASN][1000 genomes]
rs17502719	0.90[YRI][hapmap]
rs17502895	1.00[YRI][hapmap]
rs17502922	0.90[YRI][hapmap]
rs1990122	0.81[ASN][1000 genomes]
rs1990123	1.00[CEU][hapmap];0.86[CHB][hapmap];0.85[JPT][hapmap];0.89[YRI][hapmap]
rs2391420	0.85[AMR][1000 genomes];0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4357199	0.89[CHB][hapmap]
rs4719886	0.90[JPT][hapmap]
rs4719889	0.93[ASN][1000 genomes]
rs4722689	0.85[CHB][hapmap];0.95[JPT][hapmap];0.97[ASN][1000 genomes]
rs4722690	0.91[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs4722691	0.91[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6462010	0.91[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs6945955	1.00[CEU][hapmap];0.86[CHB][hapmap];0.90[JPT][hapmap]
rs6971228	0.91[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6978314	0.95[ASN][1000 genomes]
rs722562	0.82[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1025538	chr7:26482342-27376045	Enhancers Bivalent/Poised TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Transcr. at gene 5' and 3' Active TSS Genic enhancers Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	213 gene(s)	inside rSNPs	diseases
2	nsv538805	chr7:26482342-27376045	Bivalent/Poised TSS Flanking Bivalent TSS/Enh Enhancers Bivalent Enhancer Active TSS Strong transcription Flanking Active TSS Genic enhancers Weak transcription Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	213 gene(s)	inside rSNPs	diseases
3	nsv531024	chr7:27194426-27461954	Enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Weak transcription Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	148 gene(s)	inside rSNPs	diseases
4	nsv887893	chr7:27326739-27380936	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:27372800-27373600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
2	chr7:27372800-27373600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr7:27372800-27373800	Enhancers	HMEC	breast

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