Variant report

Variant	rs2391420
Chromosome Location	chr7:27388486-27388487
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr7:27388390..27389956-chr7:27404431..27406421,2	MCF-7	breast:
2	chr7:27386607..27388873-chr7:27463888..27465828,2	MCF-7	breast:
3	chr7:27384045..27386123-chr7:27387146..27389206,2	MCF-7	breast:

Extended variants
information (count: 24 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs10155834	0.92[CEU][hapmap];0.91[CHB][hapmap];0.84[CHD][hapmap];1.00[GIH][hapmap];0.86[MEX][hapmap];0.98[TSI][hapmap]
rs10245801	0.91[CHB][hapmap];0.81[JPT][hapmap];0.82[ASN][1000 genomes]
rs10275933	1.00[CHB][hapmap];0.80[JPT][hapmap];0.88[ASN][1000 genomes]
rs11563971	0.86[CHB][hapmap];0.84[CHD][hapmap]
rs11563975	0.80[ASN][1000 genomes]
rs11563976	0.86[CHB][hapmap];0.88[CHD][hapmap];0.81[JPT][hapmap]
rs1547943	1.00[CHB][hapmap];0.91[JPT][hapmap];0.93[ASN][1000 genomes]
rs17429177	0.86[CHB][hapmap]
rs17438605	0.93[ASN][1000 genomes]
rs1990123	0.92[CEU][hapmap];0.91[CHB][hapmap];0.86[CHD][hapmap];1.00[GIH][hapmap];0.82[JPT][hapmap];0.86[MEX][hapmap];0.98[TSI][hapmap]
rs4357199	0.89[CHB][hapmap]
rs4719886	0.83[CHB][hapmap];0.82[CHD][hapmap]
rs4719887	0.92[CEU][hapmap];0.85[CHB][hapmap];0.85[JPT][hapmap];0.85[AMR][1000 genomes];0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4719889	0.96[ASN][1000 genomes]
rs4722689	1.00[CHB][hapmap];0.95[CHD][hapmap];0.90[JPT][hapmap];0.92[ASN][1000 genomes]
rs4722690	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4722691	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6462010	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6945955	0.91[CEU][hapmap];0.91[CHB][hapmap]
rs6971228	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6978314	0.91[ASN][1000 genomes]
rs722562	0.87[AMR][1000 genomes];0.87[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7801897	0.84[CHD][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv531024	chr7:27194426-27461954	Enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Weak transcription Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	148 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:27379800-27388800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr7:27387200-27390200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
3	chr7:27388000-27389400	Weak transcription	A549	lung

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