Variant report

Variant	rs4719886
Chromosome Location	chr7:27372639-27372640
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 35 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs1007862	0.81[EUR][1000 genomes]
rs10155834	0.91[CHB][hapmap];0.93[CHD][hapmap];0.91[JPT][hapmap]
rs10245801	0.83[CEU][hapmap];0.80[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs10275933	0.93[CEU][hapmap];0.83[CHB][hapmap];0.88[AMR][1000 genomes];0.99[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11563447	0.82[CEU][hapmap];0.82[EUR][1000 genomes]
rs11563574	0.82[CEU][hapmap];0.82[EUR][1000 genomes]
rs11563971	0.88[CEU][hapmap];0.83[TSI][hapmap];0.82[EUR][1000 genomes]
rs11563973	0.81[EUR][1000 genomes]
rs11563975	0.88[CEU][hapmap];0.83[EUR][1000 genomes]
rs11563976	0.82[CEU][hapmap];0.82[TSI][hapmap];0.83[EUR][1000 genomes]
rs11980136	0.81[CHB][hapmap]
rs12674312	0.83[EUR][1000 genomes]
rs1547943	0.94[CEU][hapmap];0.83[CHB][hapmap];0.91[JPT][hapmap];0.88[AMR][1000 genomes];0.99[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs17429177	0.82[CEU][hapmap];0.83[EUR][1000 genomes]
rs17429249	0.88[CEU][hapmap];0.80[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs17429270	0.82[CEU][hapmap];0.82[EUR][1000 genomes]
rs17438605	0.88[AMR][1000 genomes];0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1990121	0.82[CHB][hapmap];1.00[LWK][hapmap]
rs1990122	0.82[CHB][hapmap];0.86[ASN][1000 genomes]
rs1990123	0.91[CHB][hapmap];0.95[CHD][hapmap];0.95[JPT][hapmap]
rs2391420	0.84[ASN][1000 genomes]
rs4357199	0.88[CEU][hapmap];0.85[CHB][hapmap];0.82[EUR][1000 genomes]
rs4719887	0.90[JPT][hapmap];0.92[ASN][1000 genomes]
rs4719889	0.91[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4722689	0.94[CEU][hapmap];0.83[CHB][hapmap];0.86[CHD][hapmap];0.96[GIH][hapmap];0.86[JPT][hapmap];0.92[TSI][hapmap];0.84[AMR][1000 genomes];0.99[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6945955	0.91[CHB][hapmap];1.00[JPT][hapmap]
rs6978314	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs722563	0.88[CEU][hapmap];0.91[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs764558	0.81[CHB][hapmap]
rs7801897	0.82[CHB][hapmap];0.88[CHD][hapmap]
rs9332393	0.82[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1025538	chr7:26482342-27376045	Enhancers Bivalent/Poised TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Transcr. at gene 5' and 3' Active TSS Genic enhancers Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	213 gene(s)	inside rSNPs	diseases
2	nsv538805	chr7:26482342-27376045	Bivalent/Poised TSS Flanking Bivalent TSS/Enh Enhancers Bivalent Enhancer Active TSS Strong transcription Flanking Active TSS Genic enhancers Weak transcription Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	213 gene(s)	inside rSNPs	diseases
3	nsv531024	chr7:27194426-27461954	Enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Weak transcription Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	148 gene(s)	inside rSNPs	diseases
4	nsv887893	chr7:27326739-27380936	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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