Variant report

Variant	rs9332393
Chromosome Location	chr7:27403211-27403212
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:27402338..27404495-chr7:27407726..27411327,5	K562	blood:
2	chr7:27403084..27405273-chr7:27422070..27424632,2	K562	blood:

Extended variants
information (count: 46 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:44)

rs_ID	r²[population]
rs1007862	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10155834	0.86[CHB][hapmap]
rs10240892	0.86[ASN][1000 genomes]
rs10245801	0.94[CEU][hapmap];1.00[CHB][hapmap];0.87[JPT][hapmap];0.82[AMR][1000 genomes];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10275933	0.94[CEU][hapmap];0.86[CHB][hapmap];0.82[EUR][1000 genomes]
rs11520770	0.82[CHB][hapmap];0.86[JPT][hapmap]
rs11563380	0.82[JPT][hapmap]
rs11563447	1.00[CEU][hapmap];0.98[EUR][1000 genomes]
rs11563567	0.82[JPT][hapmap]
rs11563574	1.00[CEU][hapmap];0.98[EUR][1000 genomes]
rs11563971	0.94[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11563973	0.94[CEU][hapmap];0.97[EUR][1000 genomes]
rs11563975	1.00[CEU][hapmap];0.82[CHB][hapmap];0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11563976	1.00[CEU][hapmap];1.00[CHB][hapmap];0.86[JPT][hapmap];1.00[YRI][hapmap];0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11563980	0.84[YRI][hapmap]
rs11978918	0.85[JPT][hapmap]
rs12674312	0.82[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1547943	0.94[CEU][hapmap];0.86[CHB][hapmap];0.83[EUR][1000 genomes]
rs17429177	1.00[CEU][hapmap];1.00[CHB][hapmap];0.91[JPT][hapmap];1.00[YRI][hapmap];0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs17429249	0.94[CEU][hapmap];0.83[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs17429270	1.00[CEU][hapmap];0.98[EUR][1000 genomes]
rs17429361	0.82[CHB][hapmap];0.83[JPT][hapmap];0.82[ASN][1000 genomes]
rs17429641	0.82[JPT][hapmap]
rs17429648	0.82[JPT][hapmap]
rs17439000	0.82[CHB][hapmap];0.83[JPT][hapmap];0.81[ASN][1000 genomes]
rs17439221	0.82[JPT][hapmap]
rs17439235	0.82[JPT][hapmap]
rs1990123	0.86[CHB][hapmap]
rs2003460	0.83[ASN][1000 genomes]
rs2106926	0.84[EUR][1000 genomes]
rs4298409	0.85[JPT][hapmap]
rs4357199	0.94[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4470906	0.85[JPT][hapmap]
rs4719886	0.87[CEU][hapmap]
rs4719887	0.85[CHB][hapmap]
rs4719889	0.82[EUR][1000 genomes]
rs4722689	0.94[CEU][hapmap];0.86[CHB][hapmap];0.83[EUR][1000 genomes]
rs4722690	0.80[ASN][1000 genomes]
rs4722691	0.84[ASN][1000 genomes]
rs6945955	0.87[CHB][hapmap]
rs6971228	0.83[ASN][1000 genomes]
rs6978314	0.82[EUR][1000 genomes]
rs722562	0.83[ASN][1000 genomes]
rs722563	0.88[CEU][hapmap];0.88[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv531024	chr7:27194426-27461954	Enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Weak transcription Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	148 gene(s)	inside rSNPs	diseases
2	nsv830930	chr7:27395838-27587355	Weak transcription Enhancers Strong transcription ZNF genes & repeats Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	17 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:27394200-27403400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
2	chr7:27398200-27407400	Weak transcription	Pancreas	Pancrea
3	chr7:27399400-27403400	Weak transcription	Adipose Nuclei	Adipose
4	chr7:27400400-27403600	Weak transcription	Primary monocytes fromperipheralblood	blood
5	chr7:27400400-27403600	Weak transcription	Monocytes-CD14+_RO01746	blood
6	chr7:27401200-27404400	Weak transcription	Sigmoid Colon	Sigmoid Colon
7	chr7:27401400-27403600	Weak transcription	Rectal Mucosa Donor 29	rectum
8	chr7:27402200-27403800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
9	chr7:27402400-27403400	Weak transcription	K562	blood
10	chr7:27402400-27404000	Weak transcription	Rectal Mucosa Donor 31	rectum
11	chr7:27403200-27403600	Enhancers	Skeletal Muscle Male	skeletal muscle
12	chr7:27403200-27403800	Enhancers	Ovary	ovary
13	chr7:27403200-27405000	Enhancers	Stomach Mucosa	stomach

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