Variant report

Variant	rs2106926
Chromosome Location	chr7:27411872-27411873
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr7:27274895..27275597-chr7:27411641..27412288,2	MCF-7	breast:
2	chr7:27400989..27404495-chr7:27408485..27412561,4	K562	blood:
3	chr7:27411422..27413015-chr7:27419474..27421676,2	MCF-7	breast:
4	chr7:27396768..27399494-chr7:27410784..27413777,2	MCF-7	breast:
5	chr7:27411520..27413922-chr7:27416593..27418466,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000224322	Chromatin interaction

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs1007862	0.84[EUR][1000 genomes]
rs10245801	0.81[EUR][1000 genomes]
rs10274728	0.95[CHB][hapmap];0.86[JPT][hapmap];0.93[ASN][1000 genomes]
rs10282366	0.91[ASN][1000 genomes]
rs11520770	0.89[CEU][hapmap];0.91[EUR][1000 genomes]
rs11563321	0.82[EUR][1000 genomes]
rs11563447	0.95[CHB][hapmap];1.00[JPT][hapmap];0.89[AMR][1000 genomes];0.84[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11563574	0.89[AMR][1000 genomes];0.84[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11563971	0.84[EUR][1000 genomes]
rs11563973	0.95[CHB][hapmap];1.00[JPT][hapmap];0.87[AMR][1000 genomes];0.83[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11563975	0.81[CHB][hapmap];0.83[EUR][1000 genomes]
rs11563976	0.83[EUR][1000 genomes]
rs12674312	0.85[EUR][1000 genomes]
rs17429177	0.83[EUR][1000 genomes]
rs17429249	0.85[EUR][1000 genomes]
rs17429270	0.95[CHB][hapmap];1.00[JPT][hapmap];0.89[AMR][1000 genomes];0.84[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs17429361	0.89[CEU][hapmap];0.91[EUR][1000 genomes]
rs17439000	0.89[CEU][hapmap];0.91[EUR][1000 genomes]
rs2003460	0.91[EUR][1000 genomes]
rs4357199	0.84[EUR][1000 genomes]
rs9332393	0.84[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv531024	chr7:27194426-27461954	Enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Weak transcription Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	148 gene(s)	inside rSNPs	diseases
2	nsv830930	chr7:27395838-27587355	Weak transcription Enhancers Strong transcription ZNF genes & repeats Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	17 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:27404800-27415000	Weak transcription	Right Atrium	heart
2	chr7:27407800-27412000	Weak transcription	Spleen	Spleen
3	chr7:27411400-27412600	Enhancers	Monocytes-CD14+_RO01746	blood
4	chr7:27411600-27412200	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
5	chr7:27411600-27412200	Enhancers	Stomach Mucosa	stomach
6	chr7:27411600-27412200	Enhancers	A549	lung
7	chr7:27411600-27412200	Enhancers	Hela-S3	cervix
8	chr7:27411600-27412400	Enhancers	iPS-18 Cell Line	embryonic stem cell
9	chr7:27411600-27412400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
10	chr7:27411600-27412800	Enhancers	Primary monocytes fromperipheralblood	blood
11	chr7:27411600-27413000	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
12	chr7:27411800-27412000	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
13	chr7:27411800-27412200	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
14	chr7:27411800-27412400	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
15	chr7:27411800-27412400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
16	chr7:27411800-27412600	Enhancers	NHDF-Ad	bronchial
17	chr7:27411800-27412600	Enhancers	Osteobl	bone
18	chr7:27411800-27412800	Enhancers	HUES6 Cell Line	embryonic stem cell
19	chr7:27411800-27412800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
20	chr7:27411800-27412800	Enhancers	K562	blood
21	chr7:27411800-27413000	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell

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