Variant report

Variant	rs10245801
Chromosome Location	chr7:27394232-27394233
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:27391102..27394660-chr7:27401412..27404075,3	MCF-7	breast:
2	chr7:27393165..27395076-chr7:27476139..27478551,2	K562	blood:

Variant related genes	Relation type
ENSG00000224322	Chromatin interaction

Extended variants
information (count: 38 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:36)

rs_ID	r²[population]
rs1007862	0.82[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10155834	0.86[CHB][hapmap]
rs10240892	0.95[ASN][1000 genomes]
rs10275933	0.82[CEU][hapmap];0.91[CHB][hapmap];0.80[EUR][1000 genomes]
rs11520770	0.82[CHB][hapmap];0.83[AMR][1000 genomes]
rs11563447	0.89[CEU][hapmap];0.93[EUR][1000 genomes]
rs11563574	0.89[CEU][hapmap];0.93[EUR][1000 genomes]
rs11563971	0.94[CEU][hapmap];1.00[CHB][hapmap];0.86[JPT][hapmap];0.81[AFR][1000 genomes];0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11563973	0.83[CEU][hapmap];0.92[EUR][1000 genomes]
rs11563975	0.89[CEU][hapmap];0.82[CHB][hapmap];0.83[JPT][hapmap];0.82[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11563976	0.88[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12674312	0.87[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1547943	0.91[CHB][hapmap];0.81[EUR][1000 genomes]
rs17429177	0.89[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.82[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs17429249	0.94[CEU][hapmap];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs17429270	0.89[CEU][hapmap];0.93[EUR][1000 genomes]
rs17429361	0.82[CHB][hapmap];0.84[AMR][1000 genomes]
rs17439000	0.82[CHB][hapmap];0.83[AMR][1000 genomes]
rs1990123	0.86[CHB][hapmap]
rs2003460	0.80[AMR][1000 genomes]
rs2106926	0.81[EUR][1000 genomes]
rs2391420	0.82[ASN][1000 genomes]
rs4357199	0.94[CEU][hapmap];1.00[CHB][hapmap];0.86[JPT][hapmap];1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4719886	0.83[CEU][hapmap]
rs4719887	0.85[CHB][hapmap]
rs4719889	0.81[EUR][1000 genomes]
rs4722689	0.91[CHB][hapmap];0.81[EUR][1000 genomes]
rs4722690	0.89[ASN][1000 genomes]
rs4722691	0.86[ASN][1000 genomes]
rs6462010	0.87[ASN][1000 genomes]
rs6945955	0.87[CHB][hapmap]
rs6971228	0.85[ASN][1000 genomes]
rs6978314	0.81[EUR][1000 genomes]
rs722562	0.89[ASN][1000 genomes]
rs722563	0.94[CEU][hapmap];0.81[JPT][hapmap];0.86[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs9332393	0.82[AMR][1000 genomes];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv531024	chr7:27194426-27461954	Enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Weak transcription Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	148 gene(s)	inside rSNPs	diseases
2	nsv971154	chr7:27390702-27397127	Enhancers Weak transcription Flanking Active TSS	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:27390200-27396000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr7:27394200-27403400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived

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