Variant report

Variant	rs6971228
Chromosome Location	chr7:27389982-27389983
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr7:27385251..27387696-chr7:27388686..27391421,2	K562	blood:
2	chr7:27389345..27391208-chr7:27395433..27397427,2	MCF-7	breast:
3	chr7:27385251..27387696-chr7:27388686..27392238,3	K562	blood:

Extended variants
information (count: 32 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs1007862	0.83[ASN][1000 genomes]
rs10155834	0.88[CEU][hapmap];0.90[CHB][hapmap]
rs10240892	0.81[ASN][1000 genomes]
rs10245801	0.90[CHB][hapmap];0.82[JPT][hapmap];0.85[ASN][1000 genomes]
rs10275933	1.00[CHB][hapmap];0.85[ASN][1000 genomes]
rs11563971	0.85[CHB][hapmap];0.81[ASN][1000 genomes]
rs11563975	0.87[ASN][1000 genomes]
rs11563976	0.85[CHB][hapmap];0.82[JPT][hapmap];0.89[ASN][1000 genomes]
rs12674312	0.85[ASN][1000 genomes]
rs1547943	1.00[CHB][hapmap];0.82[JPT][hapmap];0.84[ASN][1000 genomes]
rs17429177	0.86[CHB][hapmap];0.87[ASN][1000 genomes]
rs17429249	0.87[ASN][1000 genomes]
rs17438605	0.84[ASN][1000 genomes]
rs1990121	0.80[CHB][hapmap]
rs1990122	0.81[CHB][hapmap]
rs1990123	0.88[CEU][hapmap];0.90[CHB][hapmap]
rs2391420	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4357199	0.89[CHB][hapmap];0.81[ASN][1000 genomes]
rs4719886	0.81[CHB][hapmap]
rs4719887	0.88[CEU][hapmap];0.85[CHB][hapmap];0.91[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4719889	0.86[ASN][1000 genomes]
rs4722689	1.00[CHB][hapmap];0.85[JPT][hapmap];0.87[YRI][hapmap];0.83[ASN][1000 genomes]
rs4722690	0.88[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4722691	0.88[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6462010	0.87[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6945955	0.88[CEU][hapmap];0.90[CHB][hapmap]
rs6978314	0.88[ASN][1000 genomes]
rs722562	0.85[AMR][1000 genomes];0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs764558	0.80[CHB][hapmap]
rs7801897	0.80[CHB][hapmap]
rs9332393	0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv531024	chr7:27194426-27461954	Enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Weak transcription Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	148 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:27387200-27390200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
2	chr7:27388800-27390200	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
3	chr7:27389400-27390000	Enhancers	A549	lung

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