Variant report
| Variant | rs6945955 |
|---|---|
| Chromosome Location | chr7:27370919-27370920 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
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rSNPs within LD-proxies of this variant (count:29)
| rs_ID | r2[population] |
|---|---|
| rs10155834 | 1.00[CEU][hapmap];1.00[CHB][hapmap];0.91[JPT][hapmap] |
| rs10245801 | 0.87[CHB][hapmap] |
| rs10275933 | 0.91[CHB][hapmap];0.81[ASN][1000 genomes] |
| rs11563971 | 0.87[CHB][hapmap] |
| rs11563976 | 0.87[CHB][hapmap] |
| rs11563997 | 0.87[CHB][hapmap] |
| rs13238950 | 0.81[CHB][hapmap] |
| rs1547943 | 0.91[CHB][hapmap];0.91[JPT][hapmap];0.88[ASN][1000 genomes] |
| rs17429177 | 0.87[CHB][hapmap] |
| rs17438605 | 0.87[ASN][1000 genomes] |
| rs1990121 | 0.81[CHB][hapmap] |
| rs1990122 | 0.82[CHB][hapmap];0.81[ASN][1000 genomes] |
| rs1990123 | 1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap] |
| rs2391420 | 0.87[EUR][1000 genomes];0.83[ASN][1000 genomes] |
| rs4357199 | 0.95[CHB][hapmap] |
| rs4719886 | 0.91[CHB][hapmap];1.00[JPT][hapmap] |
| rs4719887 | 1.00[CEU][hapmap];0.86[CHB][hapmap];0.90[JPT][hapmap];0.88[AMR][1000 genomes];0.90[EUR][1000 genomes];0.87[ASN][1000 genomes] |
| rs4719889 | 0.84[ASN][1000 genomes] |
| rs4719890 | 0.81[CHB][hapmap] |
| rs4722688 | 0.86[CHB][hapmap] |
| rs4722689 | 0.91[CHB][hapmap];0.86[JPT][hapmap];0.89[ASN][1000 genomes] |
| rs4722690 | 0.83[EUR][1000 genomes] |
| rs4722691 | 0.83[EUR][1000 genomes] |
| rs6462010 | 0.83[EUR][1000 genomes] |
| rs6952278 | 0.81[CHB][hapmap] |
| rs6971228 | 0.83[EUR][1000 genomes] |
| rs6978314 | 0.82[ASN][1000 genomes] |
| rs764558 | 0.81[CHB][hapmap] |
| rs7801897 | 0.81[CHB][hapmap] |
Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv1025538 | chr7:26482342-27376045 | Enhancers Bivalent/Poised TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Transcr. at gene 5' and 3' Active TSS Genic enhancers Strong transcription ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNAmiRNA target site | 213 gene(s) | inside rSNPs | diseases |
| 2 | nsv538805 | chr7:26482342-27376045 | Bivalent/Poised TSS Flanking Bivalent TSS/Enh Enhancers Bivalent Enhancer Active TSS Strong transcription Flanking Active TSS Genic enhancers Weak transcription Transcr. at gene 5' and 3' ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNAmiRNA target site | 213 gene(s) | inside rSNPs | diseases |
| 3 | nsv531024 | chr7:27194426-27461954 | Enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Weak transcription Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats Strong transcription | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNAmiRNA target site | 148 gene(s) | inside rSNPs | diseases |
| 4 | nsv887893 | chr7:27326739-27380936 | Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNA | 3 gene(s) | inside rSNPs | diseases |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
