Variant report

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:27373141..27375148-chr7:27379553..27381903,2	MCF-7	breast:
2	7:27238414-27242313..7:27379429-27382419	H1-hESC	embryonic stem cell:	embryo

Variant related genes	Relation type
ENSG00000243766	Chromatin interaction
ENSG00000106031	Chromatin interaction

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs10155834	0.80[CHB][hapmap]
rs10951158	0.85[CHB][hapmap];0.90[JPT][hapmap];0.80[ASN][1000 genomes]
rs11563997	0.95[CHB][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs1158633	0.92[ASN][1000 genomes]
rs11765116	0.80[CHB][hapmap];0.90[JPT][hapmap];0.80[ASN][1000 genomes]
rs11765299	0.81[CHB][hapmap];0.90[JPT][hapmap];0.80[ASN][1000 genomes]
rs11767441	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11772043	0.80[CHB][hapmap]
rs11980136	0.90[JPT][hapmap]
rs1990123	0.81[CHB][hapmap]
rs4719888	0.94[ASN][1000 genomes]
rs4719890	0.90[CHB][hapmap]
rs4722686	0.80[CHB][hapmap];0.90[JPT][hapmap]
rs4722687	0.80[CHB][hapmap];0.90[JPT][hapmap]
rs4722688	0.90[CHB][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs4722692	0.87[CEU][hapmap];0.85[CHB][hapmap];0.89[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs6945955	0.81[CHB][hapmap]
rs6952278	0.90[CHB][hapmap];1.00[JPT][hapmap];0.80[ASN][1000 genomes]
rs6960719	0.93[ASN][1000 genomes]
rs6962442	0.87[ASN][1000 genomes]
rs6971604	0.85[CHB][hapmap]
rs764560	0.80[CHB][hapmap]
rs7794723	0.94[ASN][1000 genomes]
rs7811453	0.81[CHB][hapmap];0.90[JPT][hapmap];0.85[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv531024	chr7:27194426-27461954	Enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Weak transcription Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	148 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:27378200-27381800	Enhancers	Primary monocytes fromperipheralblood	blood
2	chr7:27379600-27383800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
3	chr7:27379800-27381600	Weak transcription	HepG2	liver
4	chr7:27379800-27384400	Weak transcription	Rectal Mucosa Donor 31	rectum
5	chr7:27379800-27384400	Weak transcription	A549	lung
6	chr7:27379800-27388800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
7	chr7:27380000-27384800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
8	chr7:27381000-27381400	Enhancers	Fetal Heart	heart
9	chr7:27381200-27381800	Enhancers	Fetal Intestine Small	intestine
10	chr7:27381200-27383000	Weak transcription	Monocytes-CD14+_RO01746	blood

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