Variant report

Variant	rs11767441
Chromosome Location	chr7:27383799-27383800
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs10951158	0.90[JPT][hapmap];0.93[YRI][hapmap];0.81[ASN][1000 genomes]
rs11563997	0.86[CHB][hapmap];0.90[JPT][hapmap];0.93[ASN][1000 genomes]
rs1158633	0.93[ASN][1000 genomes]
rs11765116	0.89[JPT][hapmap];0.93[YRI][hapmap];0.81[ASN][1000 genomes]
rs11765299	0.90[JPT][hapmap];0.93[YRI][hapmap];0.81[ASN][1000 genomes]
rs11980136	0.89[JPT][hapmap]
rs13238950	0.96[CEU][hapmap];0.95[JPT][hapmap];0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4719888	0.98[ASN][1000 genomes]
rs4719890	0.81[CHB][hapmap]
rs4722686	0.89[JPT][hapmap];0.87[YRI][hapmap];0.80[ASN][1000 genomes]
rs4722687	0.89[JPT][hapmap];0.93[YRI][hapmap];0.80[ASN][1000 genomes]
rs4722688	0.90[CHB][hapmap];0.90[JPT][hapmap];0.92[ASN][1000 genomes]
rs4722692	0.87[CEU][hapmap];0.89[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs6952278	0.80[CHB][hapmap];0.95[JPT][hapmap]
rs6960719	0.96[ASN][1000 genomes]
rs6962442	0.91[ASN][1000 genomes]
rs6970737	0.82[ASN][1000 genomes]
rs7794723	0.95[ASN][1000 genomes]
rs7811453	0.90[JPT][hapmap];0.92[YRI][hapmap];0.86[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv531024	chr7:27194426-27461954	Enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Weak transcription Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	148 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:27379600-27383800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
2	chr7:27379800-27384400	Weak transcription	Rectal Mucosa Donor 31	rectum
3	chr7:27379800-27384400	Weak transcription	A549	lung
4	chr7:27379800-27388800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
5	chr7:27380000-27384800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
6	chr7:27382800-27383800	Enhancers	Primary monocytes fromperipheralblood	blood
7	chr7:27383000-27384200	Enhancers	Monocytes-CD14+_RO01746	blood
8	chr7:27383200-27383800	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
9	chr7:27383400-27383800	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
10	chr7:27383600-27384800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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