Variant report
| Variant | rs6952278 |
|---|---|
| Chromosome Location | chr7:27375413-27375414 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | 7:27238414-27242313..7:27374130-27379429 | K562 | blood: |
| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| ENSG00000243766 | Chromatin interaction |
| ENSG00000106031 | Chromatin interaction |
rSNPs within LD-proxies of this variant (count:21)
| rs_ID | r2[population] |
|---|---|
| rs10155834 | 0.86[CHB][hapmap] |
| rs10951158 | 0.81[CHB][hapmap];0.90[JPT][hapmap] |
| rs11563997 | 1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.82[ASN][1000 genomes] |
| rs1158633 | 1.00[CEU][hapmap];0.82[ASN][1000 genomes] |
| rs11765116 | 0.85[CHB][hapmap];0.90[JPT][hapmap] |
| rs11765299 | 0.81[CHB][hapmap];0.91[JPT][hapmap] |
| rs11772043 | 0.85[CHB][hapmap] |
| rs11980136 | 0.90[JPT][hapmap] |
| rs13238950 | 0.90[CHB][hapmap];1.00[JPT][hapmap];0.80[ASN][1000 genomes] |
| rs1990123 | 0.86[CHB][hapmap] |
| rs4357199 | 0.84[CHB][hapmap] |
| rs4719890 | 1.00[CHB][hapmap] |
| rs4722686 | 0.85[CHB][hapmap];0.90[JPT][hapmap] |
| rs4722687 | 0.85[CHB][hapmap];0.90[JPT][hapmap] |
| rs4722688 | 0.95[CHB][hapmap];1.00[JPT][hapmap];0.81[ASN][1000 genomes] |
| rs4722692 | 0.90[CHB][hapmap] |
| rs6945955 | 0.81[CHB][hapmap] |
| rs6971604 | 0.86[CHB][hapmap] |
| rs764560 | 0.85[CHB][hapmap] |
| rs7794723 | 0.80[ASN][1000 genomes] |
| rs7811453 | 0.81[CHB][hapmap];0.91[JPT][hapmap] |
Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv1025538 | chr7:26482342-27376045 | Enhancers Bivalent/Poised TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Transcr. at gene 5' and 3' Active TSS Genic enhancers Strong transcription ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNAmiRNA target site | 213 gene(s) | inside rSNPs | diseases |
| 2 | nsv538805 | chr7:26482342-27376045 | Bivalent/Poised TSS Flanking Bivalent TSS/Enh Enhancers Bivalent Enhancer Active TSS Strong transcription Flanking Active TSS Genic enhancers Weak transcription Transcr. at gene 5' and 3' ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNAmiRNA target site | 213 gene(s) | inside rSNPs | diseases |
| 3 | nsv531024 | chr7:27194426-27461954 | Enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Weak transcription Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats Strong transcription | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNAmiRNA target site | 148 gene(s) | inside rSNPs | diseases |
| 4 | nsv887893 | chr7:27326739-27380936 | Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNA | 3 gene(s) | inside rSNPs | diseases |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
