Variant report

Variant	rs6971604
Chromosome Location	chr7:27360349-27360350
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 24 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs10951158	1.00[CHB][hapmap];0.87[ASN][1000 genomes]
rs11563997	0.91[CHB][hapmap]
rs11765116	1.00[CHB][hapmap];0.87[ASN][1000 genomes]
rs11765299	1.00[CHB][hapmap];0.87[ASN][1000 genomes]
rs11772043	1.00[CHB][hapmap];0.90[JPT][hapmap];0.95[ASN][1000 genomes]
rs11980136	0.95[CHB][hapmap];0.86[ASN][1000 genomes]
rs13238950	0.85[CHB][hapmap]
rs1990121	0.91[CEU][hapmap];0.82[CHB][hapmap];0.87[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs1990122	0.95[CEU][hapmap];0.82[CHB][hapmap];0.88[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs4719890	0.86[CHB][hapmap]
rs4722686	1.00[CHB][hapmap];0.88[ASN][1000 genomes]
rs4722687	1.00[CHB][hapmap];0.88[ASN][1000 genomes]
rs4722688	0.85[CHB][hapmap]
rs6952278	0.86[CHB][hapmap]
rs764557	0.92[CEU][hapmap];0.90[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs764558	0.92[CEU][hapmap];0.81[CHB][hapmap];0.81[JPT][hapmap];0.90[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs764560	1.00[CHB][hapmap];0.90[JPT][hapmap];0.96[ASN][1000 genomes]
rs7801897	0.95[CEU][hapmap];0.82[CHB][hapmap];0.88[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs7811453	1.00[CHB][hapmap];0.86[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1025538	chr7:26482342-27376045	Enhancers Bivalent/Poised TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Transcr. at gene 5' and 3' Active TSS Genic enhancers Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	213 gene(s)	inside rSNPs	diseases
2	nsv538805	chr7:26482342-27376045	Bivalent/Poised TSS Flanking Bivalent TSS/Enh Enhancers Bivalent Enhancer Active TSS Strong transcription Flanking Active TSS Genic enhancers Weak transcription Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	213 gene(s)	inside rSNPs	diseases
3	nsv531024	chr7:27194426-27461954	Enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Weak transcription Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	148 gene(s)	inside rSNPs	diseases
4	nsv887893	chr7:27326739-27380936	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
5	nsv1026851	chr7:27344799-27370551	Enhancers Weak transcription Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:27360000-27361200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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