Variant report

Variant	rs1990123
Chromosome Location	chr7:27370438-27370439
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 40 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:35)

rs_ID	r²[population]
rs10155834	1.00[CEU][hapmap];1.00[CHB][hapmap];0.98[CHD][hapmap];1.00[GIH][hapmap];0.95[JPT][hapmap];1.00[MEX][hapmap];0.81[MKK][hapmap];1.00[TSI][hapmap]
rs10245801	0.86[CHB][hapmap]
rs10275933	0.91[CHB][hapmap];0.88[ASN][1000 genomes]
rs11563971	0.87[CHB][hapmap]
rs11563976	0.87[CHB][hapmap];0.84[CHD][hapmap]
rs11563996	0.89[YRI][hapmap]
rs11563997	0.87[CHB][hapmap]
rs13238950	0.81[CHB][hapmap]
rs1547943	0.91[CHB][hapmap];0.86[JPT][hapmap];0.91[ASN][1000 genomes]
rs17428890	0.89[YRI][hapmap]
rs17429177	0.87[CHB][hapmap]
rs17438605	0.89[ASN][1000 genomes]
rs17502719	1.00[YRI][hapmap]
rs17502895	1.00[YRI][hapmap]
rs17502922	1.00[YRI][hapmap]
rs1990121	0.82[CHB][hapmap];0.80[ASN][1000 genomes]
rs1990122	0.82[CHB][hapmap];0.81[JPT][hapmap];0.87[ASN][1000 genomes]
rs2391420	0.85[AMR][1000 genomes];0.96[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4357199	0.95[CHB][hapmap]
rs4719886	0.91[CHB][hapmap];0.95[CHD][hapmap];0.95[JPT][hapmap]
rs4719887	1.00[CEU][hapmap];0.86[CHB][hapmap];0.85[JPT][hapmap];0.89[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4719889	0.87[ASN][1000 genomes]
rs4719890	0.82[CHB][hapmap]
rs4722688	0.83[CHB][hapmap]
rs4722689	0.91[CHB][hapmap];0.91[CHD][hapmap];0.91[JPT][hapmap];0.90[ASN][1000 genomes]
rs4722690	0.91[EUR][1000 genomes]
rs4722691	0.91[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs6462010	0.91[EUR][1000 genomes]
rs6945955	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap]
rs6952278	0.86[CHB][hapmap]
rs6971228	0.91[EUR][1000 genomes]
rs6978314	0.89[ASN][1000 genomes]
rs722562	0.83[EUR][1000 genomes]
rs764558	0.81[CHB][hapmap];0.80[ASN][1000 genomes]
rs7801897	0.82[CHB][hapmap];0.93[CHD][hapmap];0.80[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1025538	chr7:26482342-27376045	Enhancers Bivalent/Poised TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Transcr. at gene 5' and 3' Active TSS Genic enhancers Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	213 gene(s)	inside rSNPs	diseases
2	nsv538805	chr7:26482342-27376045	Bivalent/Poised TSS Flanking Bivalent TSS/Enh Enhancers Bivalent Enhancer Active TSS Strong transcription Flanking Active TSS Genic enhancers Weak transcription Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	213 gene(s)	inside rSNPs	diseases
3	nsv531024	chr7:27194426-27461954	Enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Weak transcription Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	148 gene(s)	inside rSNPs	diseases
4	nsv887893	chr7:27326739-27380936	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
5	nsv1026851	chr7:27344799-27370551	Enhancers Weak transcription Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links