Variant report

Variant	rs17429177
Chromosome Location	chr7:27399094-27399095
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	SPI1	chr7:27398804-27399317	HL-60	blood:	n/a	chr7:27399151-27399164

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:27396809..27399657-chr7:27404477..27407398,2	MCF-7	breast:
2	chr7:27396768..27399494-chr7:27410784..27413777,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000224322	TF binding region

Extended variants
information (count: 37 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:35)

rs_ID	r²[population]
rs1007862	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10155834	0.87[CHB][hapmap]
rs10240892	0.89[ASN][1000 genomes]
rs10245801	0.89[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.82[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10275933	0.88[CEU][hapmap];0.87[CHB][hapmap];0.84[EUR][1000 genomes]
rs11520770	0.83[CHB][hapmap]
rs11563447	1.00[CEU][hapmap];0.96[EUR][1000 genomes]
rs11563574	1.00[CEU][hapmap];0.96[EUR][1000 genomes]
rs11563971	0.94[CEU][hapmap];1.00[CHB][hapmap];0.91[JPT][hapmap];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11563973	0.94[CEU][hapmap];0.96[EUR][1000 genomes]
rs11563975	1.00[CEU][hapmap];0.83[CHB][hapmap];0.87[JPT][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11563976	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11563980	0.85[YRI][hapmap]
rs12674312	0.82[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1547943	0.89[CEU][hapmap];0.87[CHB][hapmap];0.84[EUR][1000 genomes]
rs17429249	0.94[CEU][hapmap];0.83[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17429270	1.00[CEU][hapmap];0.96[EUR][1000 genomes]
rs17429361	0.83[CHB][hapmap]
rs17439000	0.83[CHB][hapmap]
rs1990123	0.87[CHB][hapmap]
rs2106926	0.83[EUR][1000 genomes]
rs4357199	0.94[CEU][hapmap];1.00[CHB][hapmap];0.90[JPT][hapmap];0.81[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4719886	0.82[CEU][hapmap]
rs4719887	0.86[CHB][hapmap]
rs4719889	0.83[EUR][1000 genomes]
rs4722689	0.89[CEU][hapmap];0.86[CHB][hapmap];0.84[EUR][1000 genomes]
rs4722690	0.83[ASN][1000 genomes]
rs4722691	0.87[ASN][1000 genomes]
rs6462010	0.82[ASN][1000 genomes]
rs6945955	0.87[CHB][hapmap]
rs6971228	0.87[ASN][1000 genomes]
rs6978314	0.83[EUR][1000 genomes]
rs722562	0.84[ASN][1000 genomes]
rs722563	0.83[CEU][hapmap];0.89[EUR][1000 genomes]
rs9332393	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv531024	chr7:27194426-27461954	Enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Weak transcription Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	148 gene(s)	inside rSNPs	diseases
2	nsv830930	chr7:27395838-27587355	Weak transcription Enhancers Strong transcription ZNF genes & repeats Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	17 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:27394200-27403400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
2	chr7:27397600-27400400	Enhancers	Primary monocytes fromperipheralblood	blood
3	chr7:27398200-27407400	Weak transcription	Pancreas	Pancrea
4	chr7:27398800-27399400	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
5	chr7:27399000-27399200	Enhancers	Sigmoid Colon	Sigmoid Colon
6	chr7:27399000-27399400	Enhancers	Adipose Nuclei	Adipose
7	chr7:27399000-27399400	Enhancers	Stomach Mucosa	stomach

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