Variant report

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:27391102..27394660-chr7:27401412..27404075,3	MCF-7	breast:
2	chr7:27385251..27387696-chr7:27388686..27392238,3	K562	blood:

Variant related genes	Relation type
ENSG00000224322	Chromatin interaction

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs1007862	0.87[EUR][1000 genomes]
rs10245801	0.94[CEU][hapmap];0.81[JPT][hapmap];0.86[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs10275933	0.88[CEU][hapmap];0.82[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs11563447	0.83[CEU][hapmap];0.87[EUR][1000 genomes]
rs11563574	0.83[CEU][hapmap];0.87[EUR][1000 genomes]
rs11563971	0.87[CEU][hapmap];0.86[CHB][hapmap];0.80[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs11563973	0.87[EUR][1000 genomes]
rs11563975	0.83[CEU][hapmap];0.89[EUR][1000 genomes]
rs11563976	0.82[CEU][hapmap];0.86[CHB][hapmap];0.80[JPT][hapmap];0.89[EUR][1000 genomes]
rs12674312	0.82[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs1547943	0.84[CEU][hapmap];0.82[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs17429177	0.83[CEU][hapmap];0.89[EUR][1000 genomes]
rs17429249	0.89[CEU][hapmap];0.86[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs17429270	0.83[CEU][hapmap];0.87[EUR][1000 genomes]
rs17438605	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs4357199	0.89[CEU][hapmap];0.86[CHB][hapmap];0.83[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs4719886	0.88[CEU][hapmap]
rs4719889	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs4719890	0.83[CEU][hapmap]
rs4722689	0.83[CEU][hapmap];0.92[EUR][1000 genomes]
rs6978314	0.85[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs9332393	0.88[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv531024	chr7:27194426-27461954	Enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Weak transcription Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	148 gene(s)	inside rSNPs	diseases
2	nsv971154	chr7:27390702-27397127	Enhancers Weak transcription Flanking Active TSS	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:27390200-27396000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr7:27390800-27392200	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
3	chr7:27391000-27391600	Flanking Active TSS	Foreskin Melanocyte Primary Cells skin03	Skin

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