Variant report

Variant	rs11563973
Chromosome Location	chr7:27405091-27405092
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr7:27403084..27405273-chr7:27422070..27424632,2	K562	blood:
2	chr7:27396809..27399657-chr7:27404477..27407398,2	MCF-7	breast:
3	chr7:27388390..27389956-chr7:27404431..27406421,2	MCF-7	breast:
4	chr7:27399683..27403128-chr7:27404699..27407246,3	K562	blood:

Variant related genes	Relation type
ENSG00000224322	Chromatin interaction

Extended variants
information (count: 25 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs1007862	0.98[EUR][1000 genomes]
rs10245801	0.83[CEU][hapmap];0.92[EUR][1000 genomes]
rs10274728	1.00[CHB][hapmap];0.97[CHD][hapmap];0.86[JPT][hapmap];0.98[ASN][1000 genomes]
rs10275933	0.80[CEU][hapmap];0.82[EUR][1000 genomes]
rs10282366	0.97[ASN][1000 genomes]
rs11563447	0.94[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[YRI][hapmap];0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11563574	0.94[CEU][hapmap];0.99[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11563971	0.88[CEU][hapmap];0.91[TSI][hapmap];0.96[EUR][1000 genomes]
rs11563975	0.94[CEU][hapmap];0.86[CHB][hapmap];0.96[EUR][1000 genomes]
rs11563976	0.94[CEU][hapmap];0.97[TSI][hapmap];0.96[EUR][1000 genomes]
rs12674312	0.96[EUR][1000 genomes]
rs1547943	0.82[CEU][hapmap];0.82[EUR][1000 genomes]
rs17429177	0.94[CEU][hapmap];0.96[EUR][1000 genomes]
rs17429249	0.88[CEU][hapmap];0.96[EUR][1000 genomes]
rs17429270	0.94[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2106926	0.95[CHB][hapmap];1.00[JPT][hapmap];0.87[AMR][1000 genomes];0.83[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2158769	0.81[CHB][hapmap];0.85[CHD][hapmap]
rs4357199	0.88[CEU][hapmap];0.97[EUR][1000 genomes]
rs4719889	0.81[EUR][1000 genomes]
rs4722689	0.83[CEU][hapmap];0.82[EUR][1000 genomes]
rs6978314	0.81[EUR][1000 genomes]
rs722563	0.87[EUR][1000 genomes]
rs9332393	0.97[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv531024	chr7:27194426-27461954	Enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Weak transcription Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	148 gene(s)	inside rSNPs	diseases
2	nsv830930	chr7:27395838-27587355	Weak transcription Enhancers Strong transcription ZNF genes & repeats Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	17 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:27398200-27407400	Weak transcription	Pancreas	Pancrea
2	chr7:27404000-27405200	Enhancers	A549	lung
3	chr7:27404200-27407000	Weak transcription	Rectal Mucosa Donor 29	rectum
4	chr7:27404200-27411800	Weak transcription	K562	blood
5	chr7:27404600-27405200	Enhancers	NHDF-Ad	bronchial
6	chr7:27404800-27405200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
7	chr7:27404800-27405200	Enhancers	Adipose Nuclei	Adipose
8	chr7:27404800-27405200	Enhancers	Osteobl	bone
9	chr7:27404800-27405400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
10	chr7:27404800-27405600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
11	chr7:27404800-27407400	Weak transcription	Sigmoid Colon	Sigmoid Colon
12	chr7:27404800-27415000	Weak transcription	Right Atrium	heart
13	chr7:27405000-27407400	Weak transcription	Spleen	Spleen
14	chr7:27405000-27407600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived

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