Variant report

Variant	rs11563976
Chromosome Location	chr7:27397188-27397189
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr7:27396809..27399657-chr7:27404477..27407398,2	MCF-7	breast:
2	chr7:27396768..27399494-chr7:27410784..27413777,2	MCF-7	breast:
3	chr7:27389345..27391208-chr7:27395433..27397427,2	MCF-7	breast:

Extended variants
information (count: 37 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:35)

rs_ID	r²[population]
rs1007862	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10155834	0.87[CHB][hapmap];0.81[CHD][hapmap]
rs10240892	0.91[ASN][1000 genomes]
rs10245801	0.88[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10275933	0.87[CEU][hapmap];0.86[CHB][hapmap];0.84[EUR][1000 genomes]
rs11520770	0.82[CHB][hapmap]
rs11563447	1.00[CEU][hapmap];0.96[EUR][1000 genomes]
rs11563574	1.00[CEU][hapmap];0.96[EUR][1000 genomes]
rs11563971	0.94[CEU][hapmap];1.00[CHB][hapmap];0.95[CHD][hapmap];1.00[GIH][hapmap];0.86[JPT][hapmap];0.94[TSI][hapmap];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11563973	0.94[CEU][hapmap];0.97[TSI][hapmap];0.96[EUR][1000 genomes]
rs11563975	1.00[CEU][hapmap];0.82[CHB][hapmap];0.82[JPT][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11563980	0.83[YRI][hapmap]
rs12674312	0.82[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1547943	0.88[CEU][hapmap];0.86[CHB][hapmap];0.84[EUR][1000 genomes]
rs17429177	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs17429249	0.94[CEU][hapmap];0.83[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs17429270	1.00[CEU][hapmap];0.96[EUR][1000 genomes]
rs17429361	0.82[CHB][hapmap]
rs17439000	0.82[CHB][hapmap]
rs1990123	0.87[CHB][hapmap];0.84[CHD][hapmap]
rs2106926	0.83[EUR][1000 genomes]
rs4357199	0.94[CEU][hapmap];1.00[CHB][hapmap];0.85[JPT][hapmap];0.81[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4719886	0.82[CEU][hapmap];0.82[TSI][hapmap]
rs4719887	0.85[CHB][hapmap]
rs4719889	0.83[EUR][1000 genomes]
rs4722689	0.89[CEU][hapmap];0.86[CHB][hapmap];0.88[CHD][hapmap];0.81[TSI][hapmap];0.84[EUR][1000 genomes]
rs4722690	0.85[ASN][1000 genomes]
rs4722691	0.89[ASN][1000 genomes]
rs6462010	0.84[ASN][1000 genomes]
rs6945955	0.87[CHB][hapmap]
rs6971228	0.89[ASN][1000 genomes]
rs6978314	0.83[EUR][1000 genomes]
rs722562	0.86[ASN][1000 genomes]
rs722563	0.82[CEU][hapmap];0.86[CHB][hapmap];0.80[JPT][hapmap];0.89[EUR][1000 genomes]
rs9332393	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv531024	chr7:27194426-27461954	Enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Weak transcription Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	148 gene(s)	inside rSNPs	diseases
2	nsv830930	chr7:27395838-27587355	Weak transcription Enhancers Strong transcription ZNF genes & repeats Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	17 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:27394200-27403400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
2	chr7:27396600-27397800	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived

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