Variant report
| Variant | rs10240892 |
|---|---|
| Chromosome Location | chr7:27392663-27392664 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
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| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr7:27391102..27394660-chr7:27401412..27404075,3 | MCF-7 | breast: |
| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| ENSG00000224322 | Chromatin interaction |
rSNPs within LD-proxies of this variant (count:17)
| rs_ID | r2[population] |
|---|---|
| rs1007862 | 0.86[ASN][1000 genomes] |
| rs10245801 | 0.95[ASN][1000 genomes] |
| rs10274728 | 0.96[EUR][1000 genomes] |
| rs11563971 | 0.84[ASN][1000 genomes] |
| rs11563975 | 0.92[ASN][1000 genomes] |
| rs11563976 | 0.91[ASN][1000 genomes] |
| rs12674312 | 0.88[ASN][1000 genomes] |
| rs12700801 | 1.00[YRI][hapmap] |
| rs17429177 | 0.89[ASN][1000 genomes] |
| rs17429249 | 0.89[ASN][1000 genomes] |
| rs4357199 | 0.83[ASN][1000 genomes] |
| rs4722690 | 0.85[ASN][1000 genomes] |
| rs4722691 | 0.82[ASN][1000 genomes] |
| rs6462010 | 0.83[ASN][1000 genomes] |
| rs6971228 | 0.81[ASN][1000 genomes] |
| rs722562 | 0.85[ASN][1000 genomes] |
| rs9332393 | 0.86[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page:
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| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv531024 | chr7:27194426-27461954 | Enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Weak transcription Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats Strong transcription | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNAmiRNA target site | 148 gene(s) | inside rSNPs | diseases |
| 2 | nsv971154 | chr7:27390702-27397127 | Enhancers Weak transcription Flanking Active TSS | TF binding regionChromatin interactive region | 1 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr7:27390200-27396000 | Weak transcription | H1 BMP4 Derived Trophoblast Cultured Cells | ES cell derived |
