Variant report

Variant	rs17429249
Chromosome Location	chr7:27401038-27401039
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	ZBTB33	chr7:27400995-27401404	K562	blood:	n/a	n/a
2	MYC	chr7:27401018-27401600	K562	blood:	n/a	n/a
3	MAFF	chr7:27401015-27401318	K562	blood:	n/a	n/a
4	ZBTB33	chr7:27400932-27401463	K562	blood:	n/a	n/a
5	ETS1	chr7:27400987-27401404	GM12878	blood:	n/a	n/a
6	IRF1	chr7:27400946-27401642	K562	blood:	n/a	chr7:27401027-27401041
7	CHD2	chr7:27400942-27401603	K562	blood:	n/a	n/a

Variant related genes	Relation type
ENSG00000224322	TF binding region

Extended variants
information (count: 33 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs1007862	0.83[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10240892	0.89[ASN][1000 genomes]
rs10245801	0.94[CEU][hapmap];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10275933	0.82[CEU][hapmap];0.82[EUR][1000 genomes]
rs11520770	0.85[AMR][1000 genomes]
rs11563447	0.94[CEU][hapmap];0.97[EUR][1000 genomes]
rs11563574	0.94[CEU][hapmap];0.97[EUR][1000 genomes]
rs11563971	1.00[CEU][hapmap];0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11563973	0.88[CEU][hapmap];0.96[EUR][1000 genomes]
rs11563975	0.94[CEU][hapmap];0.83[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11563976	0.94[CEU][hapmap];0.83[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12674312	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1547943	0.84[CEU][hapmap];0.82[EUR][1000 genomes]
rs17429177	0.94[CEU][hapmap];0.83[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17429270	0.94[CEU][hapmap];0.97[EUR][1000 genomes]
rs17429361	0.86[AMR][1000 genomes]
rs17439000	0.85[AMR][1000 genomes]
rs2003460	0.83[AMR][1000 genomes]
rs2106926	0.85[EUR][1000 genomes]
rs4357199	1.00[CEU][hapmap];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4719886	0.88[CEU][hapmap]
rs4719889	0.83[EUR][1000 genomes]
rs4722689	0.83[CEU][hapmap];0.82[EUR][1000 genomes]
rs4722690	0.83[ASN][1000 genomes]
rs4722691	0.87[ASN][1000 genomes]
rs6462010	0.82[ASN][1000 genomes]
rs6971228	0.87[ASN][1000 genomes]
rs6978314	0.83[EUR][1000 genomes]
rs722562	0.84[ASN][1000 genomes]
rs722563	0.89[CEU][hapmap];0.86[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs9332393	0.83[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv531024	chr7:27194426-27461954	Enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Weak transcription Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	148 gene(s)	inside rSNPs	diseases
2	nsv830930	chr7:27395838-27587355	Weak transcription Enhancers Strong transcription ZNF genes & repeats Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	17 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:27394200-27403400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
2	chr7:27398200-27407400	Weak transcription	Pancreas	Pancrea
3	chr7:27399400-27403400	Weak transcription	Adipose Nuclei	Adipose
4	chr7:27400200-27401200	Enhancers	Stomach Mucosa	stomach
5	chr7:27400400-27403600	Weak transcription	Primary monocytes fromperipheralblood	blood
6	chr7:27400400-27403600	Weak transcription	Monocytes-CD14+_RO01746	blood
7	chr7:27400800-27401200	Enhancers	Fetal Intestine Large	intestine
8	chr7:27400800-27401400	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
9	chr7:27400800-27401400	Enhancers	Ovary	ovary
10	chr7:27401000-27401200	Enhancers	Sigmoid Colon	Sigmoid Colon
11	chr7:27401000-27401400	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
12	chr7:27401000-27401400	Enhancers	Rectal Mucosa Donor 29	rectum
13	chr7:27401000-27402400	Active TSS	K562	blood

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