Variant report

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs10155834	0.86[CHB][hapmap]
rs10951158	0.85[CHB][hapmap];0.90[JPT][hapmap]
rs11563997	1.00[CHB][hapmap];0.95[JPT][hapmap];0.84[ASN][1000 genomes]
rs1158633	0.84[ASN][1000 genomes]
rs11765116	0.86[CHB][hapmap];0.90[JPT][hapmap]
rs11765299	0.86[CHB][hapmap];0.90[JPT][hapmap]
rs11767441	0.91[ASN][1000 genomes]
rs11772043	0.86[CHB][hapmap]
rs11980136	0.80[CHB][hapmap];0.90[JPT][hapmap]
rs13238950	0.95[CHB][hapmap];1.00[JPT][hapmap];0.87[ASN][1000 genomes]
rs1990123	0.86[CHB][hapmap]
rs4357199	0.85[CHB][hapmap]
rs4719888	0.89[ASN][1000 genomes]
rs4719890	0.95[CHB][hapmap]
rs4722686	0.86[CHB][hapmap];0.90[JPT][hapmap]
rs4722687	0.86[CHB][hapmap];0.90[JPT][hapmap]
rs4722688	1.00[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap];0.83[ASN][1000 genomes]
rs4722692	0.90[CHB][hapmap]
rs6945955	0.86[CHB][hapmap]
rs6952278	0.95[CHB][hapmap];1.00[JPT][hapmap]
rs6960719	0.88[ASN][1000 genomes]
rs6971604	0.90[CHB][hapmap]
rs764560	0.86[CHB][hapmap]
rs7794723	0.85[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs7811453	0.86[CHB][hapmap];0.90[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv531024	chr7:27194426-27461954	Enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Weak transcription Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	148 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:27379600-27383800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
2	chr7:27379800-27384400	Weak transcription	Rectal Mucosa Donor 31	rectum
3	chr7:27379800-27384400	Weak transcription	A549	lung
4	chr7:27379800-27388800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
5	chr7:27380000-27384800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
6	chr7:27382800-27383800	Enhancers	Primary monocytes fromperipheralblood	blood
7	chr7:27383000-27384200	Enhancers	Monocytes-CD14+_RO01746	blood
8	chr7:27383200-27383800	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell

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