Variant report

Variant	rs66548552
Chromosome Location	chr7:108244117-108244118
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs1029706	0.93[EUR][1000 genomes]
rs12113215	1.00[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs13229324	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs13243093	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17155981	1.00[EUR][1000 genomes]
rs34152668	1.00[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs34253564	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs34575116	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs35214855	0.93[EUR][1000 genomes]
rs35848314	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs35865891	1.00[EUR][1000 genomes]
rs71568534	0.96[EUR][1000 genomes]
rs71568535	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9918603	1.00[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3348839	chr7:107377311-108286538	Weak transcription Enhancers Flanking Active TSS Genic enhancers ZNF genes & repeats Strong transcription Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	91 gene(s)	inside rSNPs	diseases
2	nsv817371	chr7:108199882-108649799	Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	36 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:108239800-108244200	Weak transcription	HUES48 Cell Line	embryonic stem cell
2	chr7:108239800-108244200	Weak transcription	HUES64 Cell Line	embryonic stem cell
3	chr7:108240000-108244200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
4	chr7:108240000-108244200	Weak transcription	Cortex derived primary cultured neurospheres	brain
5	chr7:108240400-108244400	Weak transcription	Brain Germinal Matrix	brain
6	chr7:108240400-108245600	Weak transcription	Fetal Brain Male	brain
7	chr7:108243000-108245400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
8	chr7:108243600-108244800	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
9	chr7:108243600-108246200	Enhancers	Placenta	Placenta
10	chr7:108243800-108244400	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
11	chr7:108244000-108244200	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
12	chr7:108244000-108244600	Enhancers	ES-I3 Cell Line	embryonic stem cell
13	chr7:108244000-108244600	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
14	chr7:108244000-108244800	Enhancers	H1 Cell Line	embryonic stem cell
15	chr7:108244000-108245000	Enhancers	iPS-20b Cell Line	embryonic stem cell
16	chr7:108244000-108245800	Enhancers	Fetal Brain Female	brain

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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