Variant report

Variant	rs13243093
Chromosome Location	chr7:108250035-108250036
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs1029706	1.00[CEU][hapmap];0.93[EUR][1000 genomes]
rs12113215	1.00[CEU][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12673049	1.00[YRI][hapmap]
rs13229324	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17155981	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs34152668	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs34253564	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs34575116	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs35214855	0.93[EUR][1000 genomes]
rs35848314	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs35865891	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs66548552	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs71568534	0.96[EUR][1000 genomes]
rs71568535	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9918603	1.00[CEU][hapmap];1.00[YRI][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3348839	chr7:107377311-108286538	Weak transcription Enhancers Flanking Active TSS Genic enhancers ZNF genes & repeats Strong transcription Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	91 gene(s)	inside rSNPs	diseases
2	nsv817371	chr7:108199882-108649799	Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	36 gene(s)	inside rSNPs	diseases
3	esv1792680	chr7:108246985-108254739	Enhancers Weak transcription Active TSS Flanking Active TSS	Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:108246000-108251400	Weak transcription	Brain Germinal Matrix	brain
2	chr7:108246200-108251000	Weak transcription	Placenta	Placenta
3	chr7:108248000-108251000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
4	chr7:108249200-108254800	Enhancers	Liver	Liver
5	chr7:108249800-108251000	Weak transcription	Breast Myoepithelial Primary Cells	Breast

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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