Variant report

Variant	rs6655080
Chromosome Location	chrX:109398095-109398096
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chrX:109391572..109394227-chrX:109396829..109399259,2	MCF-7	breast:
2	chrX:109391427..109394187-chrX:109397190..109399515,2	K562	blood:
3	chrX:109397479..109399469-chrX:109653469..109655817,2	MCF-7	breast:

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs16985943	1.00[ASW][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[YRI][hapmap]
rs16985945	1.00[ASW][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[YRI][hapmap]
rs5942879	1.00[MEX][hapmap]
rs6642422	1.00[ASW][hapmap];0.90[YRI][hapmap]
rs6655081	1.00[MEX][hapmap]
rs6655125	1.00[MEX][hapmap]
rs6655126	1.00[ASW][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.89[YRI][hapmap]
rs7884717	1.00[YRI][hapmap]
rs7885429	1.00[ASW][hapmap];0.86[LWK][hapmap];1.00[MEX][hapmap]
rs7886222	1.00[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3369563	chrX:109079631-109573656	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	142 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:46 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chrX:109334000-109402600	Weak transcription	Primary B cells from cord blood	blood
2	chrX:109352400-109402400	Weak transcription	Primary B cells from peripheral blood	blood
3	chrX:109352400-109414000	Weak transcription	Dnd41	blood
4	chrX:109377600-109403400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
5	chrX:109385800-109406800	Weak transcription	Gastric	stomach
6	chrX:109386400-109404000	Weak transcription	Right Ventricle	heart
7	chrX:109387800-109404200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
8	chrX:109387800-109411000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
9	chrX:109388200-109418000	Weak transcription	Duodenum Smooth Muscle	Duodenum
10	chrX:109389000-109400000	Weak transcription	Psoas Muscle	Psoas
11	chrX:109389000-109404000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
12	chrX:109389000-109416800	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
13	chrX:109389000-109418000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
14	chrX:109389200-109414600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
15	chrX:109389600-109405600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
16	chrX:109389600-109423200	Weak transcription	Primary T cells fromperipheralblood	blood
17	chrX:109389800-109401800	Weak transcription	Skeletal Muscle Female	skeletal muscle
18	chrX:109389800-109402200	Weak transcription	GM12878-XiMat	blood
19	chrX:109389800-109402400	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
20	chrX:109389800-109403000	Weak transcription	Primary neutrophils fromperipheralblood	blood
21	chrX:109389800-109403000	Weak transcription	HMEC	breast
22	chrX:109389800-109404200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
23	chrX:109389800-109404200	Weak transcription	Adipose Nuclei	Adipose
24	chrX:109389800-109415000	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
25	chrX:109389800-109418400	Weak transcription	Brain Anterior Caudate	brain
26	chrX:109389800-109431800	Weak transcription	Primary T helper cells fromperipheralblood	blood
27	chrX:109390000-109399800	Weak transcription	A549	lung
28	chrX:109390000-109401600	Weak transcription	Skeletal Muscle Male	skeletal muscle
29	chrX:109390000-109404000	Weak transcription	Fetal Thymus	thymus
30	chrX:109390000-109404200	Weak transcription	NHEK	skin
31	chrX:109390200-109405000	Weak transcription	Hela-S3	cervix
32	chrX:109390400-109401800	Weak transcription	Fetal Stomach	stomach
33	chrX:109390400-109432000	Weak transcription	Primary hematopoietic stem cells	blood
34	chrX:109391600-109398200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
35	chrX:109391600-109400000	Weak transcription	Fetal Intestine Large	intestine
36	chrX:109392800-109415000	Weak transcription	Primary T cells from cord blood	blood
37	chrX:109393000-109399600	Weak transcription	Rectal Mucosa Donor 29	rectum
38	chrX:109393000-109404000	Weak transcription	Left Ventricle	heart
39	chrX:109393200-109398400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
40	chrX:109393400-109399800	Weak transcription	K562	blood
41	chrX:109393400-109401600	Weak transcription	Primary monocytes fromperipheralblood	blood
42	chrX:109393400-109413200	Weak transcription	Sigmoid Colon	Sigmoid Colon
43	chrX:109393600-109414800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
44	chrX:109393800-109404800	Weak transcription	Fetal Intestine Small	intestine
45	chrX:109397000-109401400	Weak transcription	Monocytes-CD14+_RO01746	blood
46	chrX:109397000-109414600	Weak transcription	Duodenum Mucosa	Duodenum

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