Variant report

Variant	rs6655126
Chromosome Location	chrX:109403458-109403459
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:13)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:13 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chrX:109402727..109407753-chrX:109643147..109648806,13	MCF-7	breast:
2	chrX:109402318..109405826-chrX:109652790..109656171,5	MCF-7	breast:
3	chrX:109403416..109404358-chrX:109661134..109662229,4	K562	blood:
4	chrX:109401033..109404404-chrX:109560260..109562002,3	MCF-7	breast:
5	chrX:109403394..109404795-chrX:109656102..109657028,6	K562	blood:
6	chrX:109403445..109404417-chrX:109661192..109661790,2	MCF-7	breast:
7	chrX:109402758..109404302-chrX:109420594..109422182,2	K562	blood:
8	chrX:109403411..109404840-chrX:109651081..109652084,6	K562	blood:
9	chrX:109402027..109404583-chrX:109559673..109562572,3	K562	blood:
10	chrX:109403435..109403963-chrX:109656317..109656926,2	MCF-7	breast:
11	chrX:109400313..109408301-chrX:109409149..109412366,7	K562	blood:
12	chrX:109403173..109404817-chrX:109559522..109561244,2	MCF-7	breast:
13	chrX:109402325..109406632-chrX:109414199..109418647,5	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000101935	Chromatin interaction

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs16985943	1.00[ASW][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.89[YRI][hapmap]
rs16985945	1.00[ASW][hapmap];0.95[LWK][hapmap];1.00[MEX][hapmap];0.89[YRI][hapmap]
rs5942879	1.00[MEX][hapmap]
rs6642422	1.00[ASW][hapmap]
rs6655080	1.00[ASW][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.89[YRI][hapmap]
rs6655081	1.00[MEX][hapmap]
rs6655125	1.00[MEX][hapmap]
rs7884717	0.89[YRI][hapmap]
rs7885429	1.00[ASW][hapmap];0.86[LWK][hapmap];1.00[MEX][hapmap];0.89[YRI][hapmap]
rs7886222	0.89[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3369563	chrX:109079631-109573656	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	142 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:48 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chrX:109352400-109414000	Weak transcription	Dnd41	blood
2	chrX:109385800-109406800	Weak transcription	Gastric	stomach
3	chrX:109386400-109404000	Weak transcription	Right Ventricle	heart
4	chrX:109387800-109404200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
5	chrX:109387800-109411000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
6	chrX:109388200-109418000	Weak transcription	Duodenum Smooth Muscle	Duodenum
7	chrX:109389000-109404000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
8	chrX:109389000-109416800	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
9	chrX:109389000-109418000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
10	chrX:109389200-109414600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
11	chrX:109389600-109405600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
12	chrX:109389600-109423200	Weak transcription	Primary T cells fromperipheralblood	blood
13	chrX:109389800-109404200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
14	chrX:109389800-109404200	Weak transcription	Adipose Nuclei	Adipose
15	chrX:109389800-109415000	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
16	chrX:109389800-109418400	Weak transcription	Brain Anterior Caudate	brain
17	chrX:109389800-109431800	Weak transcription	Primary T helper cells fromperipheralblood	blood
18	chrX:109390000-109404000	Weak transcription	Fetal Thymus	thymus
19	chrX:109390000-109404200	Weak transcription	NHEK	skin
20	chrX:109390200-109405000	Weak transcription	Hela-S3	cervix
21	chrX:109390400-109432000	Weak transcription	Primary hematopoietic stem cells	blood
22	chrX:109392800-109415000	Weak transcription	Primary T cells from cord blood	blood
23	chrX:109393000-109404000	Weak transcription	Left Ventricle	heart
24	chrX:109393400-109413200	Weak transcription	Sigmoid Colon	Sigmoid Colon
25	chrX:109393600-109414800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
26	chrX:109393800-109404800	Weak transcription	Fetal Intestine Small	intestine
27	chrX:109397000-109414600	Weak transcription	Duodenum Mucosa	Duodenum
28	chrX:109399000-109404000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
29	chrX:109399000-109415000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
30	chrX:109399400-109419000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
31	chrX:109399800-109404200	Weak transcription	NH-A	brain
32	chrX:109400800-109415400	Weak transcription	Fetal Intestine Large	intestine
33	chrX:109401600-109404600	Enhancers	Skeletal Muscle Male	skeletal muscle
34	chrX:109402200-109403600	Enhancers	GM12878-XiMat	blood
35	chrX:109402400-109411400	Weak transcription	Monocytes-CD14+_RO01746	blood
36	chrX:109402400-109413200	Weak transcription	Primary monocytes fromperipheralblood	blood
37	chrX:109402800-109403800	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
38	chrX:109402800-109404000	Weak transcription	Skeletal Muscle Female	skeletal muscle
39	chrX:109402800-109412600	Weak transcription	Psoas Muscle	Psoas
40	chrX:109403000-109403600	Enhancers	K562	blood
41	chrX:109403000-109404800	Enhancers	A549	lung
42	chrX:109403000-109405000	Enhancers	HMEC	breast
43	chrX:109403000-109428200	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
44	chrX:109403200-109415000	Weak transcription	Primary B cells from cord blood	blood
45	chrX:109403400-109404200	Weak transcription	Primary B cells from peripheral blood	blood
46	chrX:109403400-109404400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
47	chrX:109403400-109404800	Enhancers	ES-I3 Cell Line	embryonic stem cell
48	chrX:109403400-109413800	Weak transcription	Primary neutrophils fromperipheralblood	blood

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