Variant report

Variant	rs6659171
Chromosome Location	chr1:157986882-157986883
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs4971175	1.00[AMR][1000 genomes]
rs6661931	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7514059	0.87[AFR][1000 genomes]
rs7521855	0.86[YRI][hapmap]
rs7540841	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1823720	chr1:157978556-158034017	Weak transcription Enhancers Genic enhancers Transcr. at gene 5' and 3' Flanking Active TSS Strong transcription Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:86 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:157969000-157988000	Weak transcription	Psoas Muscle	Psoas
2	chr1:157975400-157996800	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
3	chr1:157979800-157991000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
4	chr1:157981200-157987200	Genic enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
5	chr1:157981600-157988200	Weak transcription	Right Ventricle	heart
6	chr1:157981800-157988000	Weak transcription	Colonic Mucosa	Colon
7	chr1:157982200-157987800	Weak transcription	Fetal Heart	heart
8	chr1:157982200-157988200	Weak transcription	Fetal Intestine Large	intestine
9	chr1:157982200-157989200	Enhancers	Osteobl	bone
10	chr1:157982400-157991000	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
11	chr1:157983000-157987000	Genic enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
12	chr1:157983200-157989000	Enhancers	HUES48 Cell Line	embryonic stem cell
13	chr1:157983400-157989200	Enhancers	Adipose Nuclei	Adipose
14	chr1:157983600-157987400	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
15	chr1:157983600-157989000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
16	chr1:157983800-157993200	Enhancers	Fetal Kidney	kidney
17	chr1:157984000-157988000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
18	chr1:157984000-157989000	Enhancers	ES-I3 Cell Line	embryonic stem cell
19	chr1:157984200-157987000	Enhancers	Right Atrium	heart
20	chr1:157984200-157988200	Weak transcription	Fetal Intestine Small	intestine
21	chr1:157984400-157989200	Enhancers	HUES64 Cell Line	embryonic stem cell
22	chr1:157984400-157995400	Weak transcription	Fetal Brain Female	brain
23	chr1:157985000-157989800	Weak transcription	Rectal Mucosa Donor 29	rectum
24	chr1:157985200-157987200	Weak transcription	Fetal Muscle Trunk	muscle
25	chr1:157985200-157988200	Weak transcription	Rectal Mucosa Donor 31	rectum
26	chr1:157985200-157989200	Weak transcription	Fetal Brain Male	brain
27	chr1:157985200-157993200	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
28	chr1:157985200-157995000	Enhancers	Breast Myoepithelial Primary Cells	Breast
29	chr1:157985200-158006000	Weak transcription	Fetal Thymus	thymus
30	chr1:157985400-157987400	Weak transcription	Cortex derived primary cultured neurospheres	brain
31	chr1:157985400-157993400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
32	chr1:157985600-157988400	Weak transcription	Stomach Smooth Muscle	stomach
33	chr1:157985600-157991400	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
34	chr1:157986000-157987200	Enhancers	iPS-15b Cell Line	embryonic stem cell
35	chr1:157986000-157988600	Enhancers	NH-A	brain
36	chr1:157986000-157989000	Enhancers	HUES6 Cell Line	embryonic stem cell
37	chr1:157986000-157989200	Enhancers	iPS-18 Cell Line	embryonic stem cell
38	chr1:157986000-157993000	Enhancers	Placenta Amnion	Placenta Amnion
39	chr1:157986000-157993200	Enhancers	Placenta	Placenta
40	chr1:157986200-157987000	Genic enhancers	Fetal Stomach	stomach
41	chr1:157986200-157987200	Enhancers	H1 Cell Line	embryonic stem cell
42	chr1:157986200-157987200	Flanking Active TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
43	chr1:157986200-157987200	Genic enhancers	HSMM	muscle
44	chr1:157986200-157988600	Enhancers	Muscle Satellite Cultured Cells	--
45	chr1:157986200-157988800	Enhancers	Hela-S3	cervix
46	chr1:157986200-157989200	Enhancers	HUVEC	blood vessel
47	chr1:157986200-157993200	Enhancers	Fetal Adrenal Gland	Adrenal Gland
48	chr1:157986400-157987000	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
49	chr1:157986400-157987000	Flanking Active TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
50	chr1:157986400-157987000	Enhancers	Left Ventricle	heart

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