The 2.0 version of rSNPBase

Variant report

Variant rs6661931
Chromosome Location chr1:157986979-157986980
allele C/T
Outlinks Ensembl   UCSC
Chromatin state (count:86 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr1:157969000-157988000 Weak transcription Psoas Muscle Psoas
2 chr1:157975400-157996800 Enhancers hESC Derived CD56+ Ectoderm Cultured Cells ES cell derived
3 chr1:157979800-157991000 Weak transcription Primary hematopoietic stem cells short term culture blood
4 chr1:157981200-157987200 Genic enhancers IMR90 fetal lung fibroblasts Cell Line lung
5 chr1:157981600-157988200 Weak transcription Right Ventricle heart
6 chr1:157981800-157988000 Weak transcription Colonic Mucosa Colon
7 chr1:157982200-157987800 Weak transcription Fetal Heart heart
8 chr1:157982200-157988200 Weak transcription Fetal Intestine Large intestine
9 chr1:157982200-157989200 Enhancers Osteobl bone
10 chr1:157982400-157991000 Enhancers H9 Derived Neuronal Progenitor Cultured Cells ES cell derived
11 chr1:157983000-157987000 Genic enhancers Mesenchymal Stem Cell Derived Adipocyte Cultured Cells ES cell derived
12 chr1:157983200-157989000 Enhancers HUES48 Cell Line embryonic stem cell
13 chr1:157983400-157989200 Enhancers Adipose Nuclei Adipose
14 chr1:157983600-157987400 Enhancers ES-UCSF4 Cell Line embryonic stem cell
15 chr1:157983600-157989000 Enhancers Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
16 chr1:157983800-157993200 Enhancers Fetal Kidney kidney
17 chr1:157984000-157988000 Weak transcription iPS DF 19.11 Cell Line embryonic stem cell
18 chr1:157984000-157989000 Enhancers ES-I3 Cell Line embryonic stem cell
19 chr1:157984200-157987000 Enhancers Right Atrium heart
20 chr1:157984200-157988200 Weak transcription Fetal Intestine Small intestine
21 chr1:157984400-157989200 Enhancers HUES64 Cell Line embryonic stem cell
22 chr1:157984400-157995400 Weak transcription Fetal Brain Female brain
23 chr1:157985000-157989800 Weak transcription Rectal Mucosa Donor 29 rectum
24 chr1:157985200-157987200 Weak transcription Fetal Muscle Trunk muscle
25 chr1:157985200-157988200 Weak transcription Rectal Mucosa Donor 31 rectum
26 chr1:157985200-157989200 Weak transcription Fetal Brain Male brain
27 chr1:157985200-157993200 Enhancers Foreskin Melanocyte Primary Cells skin03 Skin
28 chr1:157985200-157995000 Enhancers Breast Myoepithelial Primary Cells Breast
29 chr1:157985200-158006000 Weak transcription Fetal Thymus thymus
30 chr1:157985400-157987400 Weak transcription Cortex derived primary cultured neurospheres brain
31 chr1:157985400-157993400 Enhancers Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
32 chr1:157985600-157988400 Weak transcription Stomach Smooth Muscle stomach
33 chr1:157985600-157991400 Enhancers hESC Derived CD56+ Mesoderm Cultured Cells ES cell derived
34 chr1:157986000-157987200 Enhancers iPS-15b Cell Line embryonic stem cell
35 chr1:157986000-157988600 Enhancers NH-A brain
36 chr1:157986000-157989000 Enhancers HUES6 Cell Line embryonic stem cell
37 chr1:157986000-157989200 Enhancers iPS-18 Cell Line embryonic stem cell
38 chr1:157986000-157993000 Enhancers Placenta Amnion Placenta Amnion
39 chr1:157986000-157993200 Enhancers Placenta Placenta
40 chr1:157986200-157987000 Genic enhancers Fetal Stomach stomach
41 chr1:157986200-157987200 Enhancers H1 Cell Line embryonic stem cell
42 chr1:157986200-157987200 Flanking Active TSS Foreskin Keratinocyte Primary Cells skin02 Skin
43 chr1:157986200-157987200 Genic enhancers HSMM muscle
44 chr1:157986200-157988600 Enhancers Muscle Satellite Cultured Cells --
45 chr1:157986200-157988800 Enhancers Hela-S3 cervix
46 chr1:157986200-157989200 Enhancers HUVEC blood vessel
47 chr1:157986200-157993200 Enhancers Fetal Adrenal Gland Adrenal Gland
48 chr1:157986400-157987000 Enhancers iPS DF 6.9 Cell Line embryonic stem cell
49 chr1:157986400-157987000 Flanking Active TSS Foreskin Keratinocyte Primary Cells skin03 Skin
50 chr1:157986400-157987000 Enhancers Left Ventricle heart

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Last update: Aug 31, 2015