Variant report

Variant	rs6659461
Chromosome Location	chr1:184350588-184350589
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:184348421..184352484-chr1:184354779..184358416,5	MCF-7	breast:
2	chr1:184349850..184351916-chr1:184352544..184355292,2	K562	blood:

Variant related genes	Relation type
ENSG00000116667	Chromatin interaction
ENSG00000271387	Chromatin interaction

Extended variants
information (count: 34 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:32)

rs_ID	r²[population]
rs12726204	0.98[EUR][1000 genomes]
rs12727991	0.98[EUR][1000 genomes]
rs12746499	0.98[EUR][1000 genomes]
rs12756084	0.86[EUR][1000 genomes]
rs1547608	0.84[EUR][1000 genomes]
rs16823065	0.98[ASN][1000 genomes]
rs2378842	0.86[ASN][1000 genomes]
rs34282348	0.82[EUR][1000 genomes]
rs34312759	0.82[EUR][1000 genomes]
rs34591137	0.84[EUR][1000 genomes]
rs34712320	0.84[EUR][1000 genomes]
rs35021091	0.94[EUR][1000 genomes]
rs35350002	0.86[EUR][1000 genomes]
rs35901887	0.84[EUR][1000 genomes]
rs35964209	0.86[EUR][1000 genomes]
rs3886022	0.94[EUR][1000 genomes]
rs3922451	0.98[ASN][1000 genomes]
rs4275415	0.98[EUR][1000 genomes]
rs4354508	0.98[EUR][1000 genomes]
rs4466608	0.84[EUR][1000 genomes]
rs4650665	0.98[EUR][1000 genomes]
rs57590305	0.88[ASN][1000 genomes]
rs59079733	0.98[EUR][1000 genomes]
rs59598210	0.98[ASN][1000 genomes]
rs6683308	0.80[AFR][1000 genomes]
rs71634106	0.88[EUR][1000 genomes]
rs71634108	0.82[EUR][1000 genomes]
rs71634109	0.82[EUR][1000 genomes]
rs74131654	0.98[EUR][1000 genomes]
rs74131659	0.98[EUR][1000 genomes]
rs7525041	0.98[ASN][1000 genomes]
rs7540074	0.91[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530079	chr1:183797938-184639971	Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
2	nsv3821	chr1:184319543-184365236	Flanking Active TSS Flanking Bivalent TSS/Enh Enhancers Weak transcription Active TSS Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:184337400-184355000	Weak transcription	Psoas Muscle	Psoas
2	chr1:184346000-184355000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
3	chr1:184346200-184355000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
4	chr1:184346400-184351800	Weak transcription	HUES48 Cell Line	embryonic stem cell
5	chr1:184347600-184350600	Enhancers	Primary hematopoietic stem cells short term culture	blood
6	chr1:184348000-184350600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
7	chr1:184348400-184352200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
8	chr1:184348400-184355000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
9	chr1:184348600-184351800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
10	chr1:184348600-184352000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
11	chr1:184348800-184355000	Weak transcription	Fetal Heart	heart
12	chr1:184348800-184355000	Weak transcription	Skeletal Muscle Male	skeletal muscle
13	chr1:184349000-184351800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
14	chr1:184349000-184355000	Weak transcription	NHLF	lung
15	chr1:184349400-184350600	Bivalent Enhancer	Primary T cells fromperipheralblood	blood
16	chr1:184350000-184350600	Enhancers	Gastric	stomach
17	chr1:184350400-184350600	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
18	chr1:184350400-184350600	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
19	chr1:184350400-184355000	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
20	chr1:184350400-184355000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--

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