Variant report

Variant	rs4650665
Chromosome Location	chr1:184343262-184343263
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:184341140..184343304-chr1:184354031..184356947,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000116667	Chromatin interaction
ENSG00000271387	Chromatin interaction

Extended variants
information (count: 60 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:58)

rs_ID	r²[population]
rs10911582	1.00[ASN][1000 genomes]
rs12082456	1.00[ASN][1000 genomes]
rs12083933	1.00[ASN][1000 genomes]
rs12723932	1.00[ASN][1000 genomes]
rs12726204	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12727991	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12735278	1.00[ASN][1000 genomes]
rs12735902	1.00[ASN][1000 genomes]
rs12743066	1.00[ASN][1000 genomes]
rs12743488	1.00[ASN][1000 genomes]
rs12746499	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12754557	1.00[ASN][1000 genomes]
rs12756084	0.88[EUR][1000 genomes]
rs12756319	1.00[ASN][1000 genomes]
rs13374609	1.00[ASN][1000 genomes]
rs1547608	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1856561	1.00[ASN][1000 genomes]
rs1970391	1.00[ASN][1000 genomes]
rs2180075	1.00[ASN][1000 genomes]
rs34072105	1.00[ASN][1000 genomes]
rs34282348	0.84[EUR][1000 genomes]
rs34312759	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34427261	1.00[ASN][1000 genomes]
rs34579903	1.00[ASN][1000 genomes]
rs34591137	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34712320	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34946851	1.00[ASN][1000 genomes]
rs35021091	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35040136	1.00[ASN][1000 genomes]
rs35350002	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35414247	1.00[ASN][1000 genomes]
rs35430213	1.00[ASN][1000 genomes]
rs35782682	1.00[ASN][1000 genomes]
rs35901887	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35964209	0.88[EUR][1000 genomes]
rs35999930	1.00[ASN][1000 genomes]
rs3886022	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4275415	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4332324	1.00[ASN][1000 genomes]
rs4354508	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4390140	1.00[ASN][1000 genomes]
rs4466608	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4650668	1.00[ASN][1000 genomes]
rs4650669	1.00[ASN][1000 genomes]
rs4651204	1.00[ASN][1000 genomes]
rs4651212	1.00[ASN][1000 genomes]
rs4651222	1.00[ASN][1000 genomes]
rs59079733	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6659461	0.98[EUR][1000 genomes]
rs66916459	1.00[ASN][1000 genomes]
rs71634105	1.00[ASN][1000 genomes]
rs71634106	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs71634108	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs71634109	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs74131654	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs74131659	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7531736	1.00[ASN][1000 genomes]
rs9970629	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530079	chr1:183797938-184639971	Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
2	nsv3821	chr1:184319543-184365236	Flanking Active TSS Flanking Bivalent TSS/Enh Enhancers Weak transcription Active TSS Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:184337400-184355000	Weak transcription	Psoas Muscle	Psoas
2	chr1:184340600-184345800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
3	chr1:184342600-184345600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell

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