Variant report

Variant	rs4332324
Chromosome Location	chr1:184321431-184321432
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:184321103..184324254-chr1:184327808..184331234,3	MCF-7	breast:

Extended variants
information (count: 55 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:53)

rs_ID	r²[population]
rs10911556	1.00[CHD][hapmap]
rs10911582	1.00[ASN][1000 genomes]
rs12082456	1.00[ASN][1000 genomes]
rs12083933	1.00[CHD][hapmap];1.00[ASN][1000 genomes]
rs12096575	1.00[CHD][hapmap]
rs12723932	1.00[ASN][1000 genomes]
rs12726204	1.00[CHD][hapmap];1.00[GIH][hapmap];0.82[MEX][hapmap];1.00[ASN][1000 genomes]
rs12727991	1.00[ASN][1000 genomes]
rs12735278	1.00[ASN][1000 genomes]
rs12735902	1.00[ASN][1000 genomes]
rs12743066	1.00[ASN][1000 genomes]
rs12743488	1.00[ASN][1000 genomes]
rs12746499	1.00[CHD][hapmap];1.00[GIH][hapmap];0.82[MEX][hapmap];1.00[ASN][1000 genomes]
rs12756319	1.00[ASN][1000 genomes]
rs13374607	1.00[GIH][hapmap]
rs13374609	1.00[ASN][1000 genomes]
rs1547608	1.00[ASN][1000 genomes]
rs1930293	1.00[CHD][hapmap]
rs34072105	1.00[ASN][1000 genomes]
rs34312759	1.00[ASN][1000 genomes]
rs34427261	1.00[ASN][1000 genomes]
rs34579903	1.00[ASN][1000 genomes]
rs34591137	1.00[ASN][1000 genomes]
rs34712320	1.00[ASN][1000 genomes]
rs34946851	1.00[ASN][1000 genomes]
rs35021091	1.00[ASN][1000 genomes]
rs35040136	1.00[ASN][1000 genomes]
rs35350002	1.00[ASN][1000 genomes]
rs35414247	1.00[ASN][1000 genomes]
rs35430213	1.00[ASN][1000 genomes]
rs35782682	1.00[ASN][1000 genomes]
rs35901887	1.00[ASN][1000 genomes]
rs35999930	1.00[ASN][1000 genomes]
rs3886022	1.00[ASN][1000 genomes]
rs4275415	1.00[ASN][1000 genomes]
rs4354508	1.00[ASN][1000 genomes]
rs4390140	1.00[ASN][1000 genomes]
rs4466608	1.00[ASN][1000 genomes]
rs4650665	1.00[ASN][1000 genomes]
rs4650668	1.00[ASN][1000 genomes]
rs4651204	1.00[ASN][1000 genomes]
rs4651207	1.00[GIH][hapmap]
rs4651212	1.00[ASN][1000 genomes]
rs59079733	1.00[ASN][1000 genomes]
rs66916459	1.00[ASN][1000 genomes]
rs71634105	1.00[ASN][1000 genomes]
rs71634106	1.00[ASN][1000 genomes]
rs71634108	1.00[ASN][1000 genomes]
rs71634109	1.00[ASN][1000 genomes]
rs74131654	1.00[ASN][1000 genomes]
rs74131659	1.00[ASN][1000 genomes]
rs7531736	1.00[ASN][1000 genomes]
rs9970629	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530079	chr1:183797938-184639971	Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
2	nsv3821	chr1:184319543-184365236	Flanking Active TSS Flanking Bivalent TSS/Enh Enhancers Weak transcription Active TSS Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:184320200-184324000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
2	chr1:184320200-184329200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
3	chr1:184320600-184322000	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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