Variant report

Variant	rs4651204
Chromosome Location	chr1:184328653-184328654
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr1:184327727..184329989-chr1:184357354..184359709,2	MCF-7	breast:
2	chr1:184327611..184330372-chr1:184331382..184334193,2	K562	blood:
3	chr1:184321103..184324254-chr1:184327808..184331234,3	MCF-7	breast:

Extended variants
information (count: 55 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:53)

rs_ID	r²[population]
rs10911556	1.00[CHD][hapmap]
rs10911582	0.97[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12082456	1.00[ASN][1000 genomes]
rs12083933	1.00[CEU][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];0.94[TSI][hapmap];1.00[YRI][hapmap];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12096575	1.00[CHD][hapmap]
rs12723932	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12726204	1.00[CHD][hapmap];1.00[ASN][1000 genomes]
rs12727991	1.00[ASN][1000 genomes]
rs12735278	1.00[ASN][1000 genomes]
rs12735902	1.00[ASN][1000 genomes]
rs12743066	1.00[ASN][1000 genomes]
rs12743488	1.00[ASN][1000 genomes]
rs12746499	1.00[CHD][hapmap];1.00[ASN][1000 genomes]
rs12756319	1.00[ASN][1000 genomes]
rs13374609	1.00[ASN][1000 genomes]
rs1547608	1.00[ASN][1000 genomes]
rs1930293	1.00[CHD][hapmap]
rs2180075	1.00[ASN][1000 genomes]
rs34072105	1.00[ASN][1000 genomes]
rs34312759	1.00[ASN][1000 genomes]
rs34427261	1.00[ASN][1000 genomes]
rs34579903	1.00[ASN][1000 genomes]
rs34591137	1.00[ASN][1000 genomes]
rs34712320	1.00[ASN][1000 genomes]
rs34946851	1.00[ASN][1000 genomes]
rs35021091	1.00[ASN][1000 genomes]
rs35040136	1.00[ASN][1000 genomes]
rs35350002	1.00[ASN][1000 genomes]
rs35414247	1.00[ASN][1000 genomes]
rs35430213	1.00[ASN][1000 genomes]
rs35782682	1.00[ASN][1000 genomes]
rs35901887	1.00[ASN][1000 genomes]
rs35999930	1.00[ASN][1000 genomes]
rs3886022	1.00[ASN][1000 genomes]
rs4275415	1.00[ASN][1000 genomes]
rs4332324	1.00[ASN][1000 genomes]
rs4354508	1.00[ASN][1000 genomes]
rs4390140	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4466608	1.00[ASN][1000 genomes]
rs4650665	1.00[ASN][1000 genomes]
rs4650668	1.00[ASN][1000 genomes]
rs4651212	1.00[ASN][1000 genomes]
rs4651222	1.00[ASN][1000 genomes]
rs59079733	1.00[ASN][1000 genomes]
rs66916459	1.00[ASN][1000 genomes]
rs71634105	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs71634106	1.00[ASN][1000 genomes]
rs71634108	1.00[ASN][1000 genomes]
rs71634109	1.00[ASN][1000 genomes]
rs74131654	1.00[ASN][1000 genomes]
rs74131659	1.00[ASN][1000 genomes]
rs7531736	1.00[ASN][1000 genomes]
rs9970629	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530079	chr1:183797938-184639971	Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
2	nsv3821	chr1:184319543-184365236	Flanking Active TSS Flanking Bivalent TSS/Enh Enhancers Weak transcription Active TSS Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:184320200-184329200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr1:184327800-184328800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
3	chr1:184328600-184329800	Enhancers	Breast Myoepithelial Primary Cells	Breast
4	chr1:184328600-184330600	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin

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