Variant report

Variant	rs35999930
Chromosome Location	chr1:184170843-184170844
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 26 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs10911511	1.00[ASN][1000 genomes]
rs10911582	1.00[ASN][1000 genomes]
rs12083933	1.00[ASN][1000 genomes]
rs12723932	1.00[ASN][1000 genomes]
rs12726204	1.00[ASN][1000 genomes]
rs12727991	1.00[ASN][1000 genomes]
rs12735902	1.00[ASN][1000 genomes]
rs12746499	1.00[ASN][1000 genomes]
rs34584127	0.85[EUR][1000 genomes]
rs34985078	1.00[ASN][1000 genomes]
rs35021091	1.00[ASN][1000 genomes]
rs35782682	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3886022	1.00[ASN][1000 genomes]
rs4275415	1.00[ASN][1000 genomes]
rs4332324	1.00[ASN][1000 genomes]
rs4354508	1.00[ASN][1000 genomes]
rs4390140	1.00[ASN][1000 genomes]
rs4650665	1.00[ASN][1000 genomes]
rs4651204	1.00[ASN][1000 genomes]
rs59079733	1.00[ASN][1000 genomes]
rs6424930	0.86[EUR][1000 genomes]
rs71634105	1.00[ASN][1000 genomes]
rs74131654	1.00[ASN][1000 genomes]
rs74131659	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530079	chr1:183797938-184639971	Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
2	nsv1006655	chr1:183922288-184186677	Active TSS Flanking Active TSS Enhancers Bivalent Enhancer Strong transcription Weak transcription Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:184162600-184191400	Weak transcription	Right Ventricle	heart
2	chr1:184167200-184171600	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
3	chr1:184167400-184172800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
4	chr1:184169200-184187600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr1:184170600-184171400	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
6	chr1:184170800-184171600	Enhancers	Cortex derived primary cultured neurospheres	brain
7	chr1:184170800-184171600	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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