Variant report

Variant	rs10911511
Chromosome Location	chr1:184087925-184087926
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 21 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs1034477	0.81[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs11585756	0.94[EUR][1000 genomes]
rs12086203	0.97[EUR][1000 genomes]
rs12403064	0.84[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs12725276	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs12729638	0.80[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs12735902	1.00[ASN][1000 genomes]
rs34010717	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs34985078	1.00[ASN][1000 genomes]
rs35178058	0.94[EUR][1000 genomes]
rs35514700	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs35782682	1.00[ASN][1000 genomes]
rs35947721	0.97[EUR][1000 genomes]
rs35999930	1.00[ASN][1000 genomes]
rs58322431	0.84[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs61477737	0.80[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs68130131	0.97[EUR][1000 genomes]
rs73053551	0.84[AMR][1000 genomes];0.89[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530079	chr1:183797938-184639971	Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
2	nsv533206	chr1:183861204-184091272	Enhancers Weak transcription Active TSS Strong transcription Bivalent Enhancer Flanking Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
3	nsv1006655	chr1:183922288-184186677	Active TSS Flanking Active TSS Enhancers Bivalent Enhancer Strong transcription Weak transcription Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs10911511	C1orf19	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:184065600-184093000	Weak transcription	Aorta	Aorta
2	chr1:184080800-184090800	Weak transcription	Gastric	stomach
3	chr1:184083200-184094000	Weak transcription	Primary T cells from cord blood	blood
4	chr1:184085600-184088000	Enhancers	HSMM	muscle
5	chr1:184085800-184091400	Weak transcription	Spleen	Spleen
6	chr1:184086400-184088000	Enhancers	NHDF-Ad	bronchial
7	chr1:184086400-184088000	Enhancers	NHEK	skin
8	chr1:184086600-184088000	Enhancers	Muscle Satellite Cultured Cells	--
9	chr1:184087000-184088000	Enhancers	NHLF	lung
10	chr1:184087400-184088000	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
11	chr1:184087400-184088000	Enhancers	Skeletal Muscle Male	skeletal muscle
12	chr1:184087800-184088000	Enhancers	HSMMtube	muscle
13	chr1:184087800-184090200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
14	chr1:184087800-184090600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
15	chr1:184087800-184090800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
16	chr1:184087800-184090800	Weak transcription	Osteobl	bone

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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