Variant report

Variant	rs12403064
Chromosome Location	chr1:184075188-184075189
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 35 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:32)

rs_ID	r²[population]
rs1034477	0.87[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10797941	0.94[ASN][1000 genomes]
rs10911511	0.84[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs11576332	0.94[ASN][1000 genomes]
rs11582961	0.94[ASN][1000 genomes]
rs11585756	0.83[AMR][1000 genomes];0.89[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12086203	0.86[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12402790	0.94[ASN][1000 genomes]
rs12408961	0.97[AFR][1000 genomes];0.86[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12411231	0.97[AFR][1000 genomes];0.86[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12725276	0.94[AMR][1000 genomes];0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12729638	0.86[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12734950	0.94[ASN][1000 genomes]
rs12751711	0.94[ASN][1000 genomes]
rs12759837	0.89[ASN][1000 genomes]
rs1409812	0.94[ASN][1000 genomes]
rs16822379	0.94[ASN][1000 genomes]
rs1926873	0.94[ASN][1000 genomes]
rs1991170	0.94[ASN][1000 genomes]
rs34010717	0.94[AFR][1000 genomes];0.96[AMR][1000 genomes];0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs34876045	0.94[ASN][1000 genomes]
rs35178058	0.83[AMR][1000 genomes];0.89[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs35514700	0.94[AFR][1000 genomes];0.96[AMR][1000 genomes];0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs35947721	0.86[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4650654	0.94[ASN][1000 genomes]
rs56239295	0.94[ASN][1000 genomes]
rs58322431	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61477737	0.83[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs68130131	0.86[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs73053551	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs765224	0.94[ASN][1000 genomes]
rs765225	0.94[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530079	chr1:183797938-184639971	Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
2	nsv533206	chr1:183861204-184091272	Enhancers Weak transcription Active TSS Strong transcription Bivalent Enhancer Flanking Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
3	nsv1006655	chr1:183922288-184186677	Active TSS Flanking Active TSS Enhancers Bivalent Enhancer Strong transcription Weak transcription Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs12403064	C1orf19	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:184024600-184079400	Weak transcription	Thymus	Thymus
2	chr1:184065600-184093000	Weak transcription	Aorta	Aorta
3	chr1:184074800-184077400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links