The 2.0 version of rSNPBase

Variant report

Variant rs12402790
Chromosome Location chr1:184034175-184034176
allele G/T
Outlinks Ensembl   UCSC
Chromatin state (count:119 , 50 per page) page: 1 2 3
No. Chromosome Location Chromatin state Cell line Tissue
1 chr1:184021600-184050400 Weak transcription Gastric stomach
2 chr1:184021600-184055800 Weak transcription Esophagus oesophagus
3 chr1:184021800-184034600 Weak transcription iPS DF 6.9 Cell Line embryonic stem cell
4 chr1:184021800-184042000 Weak transcription Fetal Muscle Leg muscle
5 chr1:184022000-184035400 Weak transcription Brain Germinal Matrix brain
6 chr1:184022000-184037600 Weak transcription Right Ventricle heart
7 chr1:184022000-184042000 Weak transcription Psoas Muscle Psoas
8 chr1:184022000-184043600 Weak transcription Fetal Brain Male brain
9 chr1:184022200-184044000 Weak transcription Rectal Mucosa Donor 29 rectum
10 chr1:184022200-184048800 Weak transcription Duodenum Mucosa Duodenum
11 chr1:184022200-184053200 Weak transcription Fetal Intestine Small intestine
12 chr1:184023000-184034600 Weak transcription Brain Inferior Temporal Lobe brain
13 chr1:184023000-184037400 Weak transcription Brain Cingulate Gyrus brain
14 chr1:184023000-184037600 Weak transcription Brain Dorsolateral Prefrontal Cortex brain
15 chr1:184023000-184037600 Weak transcription Brain Substantia Nigra brain
16 chr1:184023000-184041000 Weak transcription Primary T cells effector/memory enriched fromperipheralblood blood
17 chr1:184023000-184041400 Weak transcription Liver Liver
18 chr1:184023000-184044000 Weak transcription Primary T helper naive cells from peripheral blood blood
19 chr1:184023000-184044200 Weak transcription HMEC breast
20 chr1:184023000-184045200 Weak transcription Primary T regulatory cells fromperipheralblood blood
21 chr1:184023400-184052000 Weak transcription Pancreatic Islets Pancreatic Islet
22 chr1:184023600-184044200 Weak transcription Brain Anterior Caudate brain
23 chr1:184024400-184045600 Weak transcription Small Intestine intestine
24 chr1:184024600-184038600 Weak transcription Primary T helper memory cells from peripheral blood 2 blood
25 chr1:184024600-184039200 Weak transcription Lung lung
26 chr1:184024600-184043800 Weak transcription Fetal Adrenal Gland Adrenal Gland
27 chr1:184024600-184044400 Weak transcription Ovary ovary
28 chr1:184024600-184063400 Weak transcription Primary mononuclear cells fromperipheralblood Blood
29 chr1:184024600-184069400 Weak transcription Foreskin Melanocyte Primary Cells skin01 Skin
30 chr1:184024600-184079400 Weak transcription Thymus Thymus
31 chr1:184024800-184043200 Weak transcription Primary T helper 17 cells PMA-I stimulated --
32 chr1:184024800-184043600 Weak transcription Primary T killer naive cells fromperipheralblood blood
33 chr1:184025400-184038000 Weak transcription HUVEC blood vessel
34 chr1:184025400-184043400 Weak transcription Breast Myoepithelial Primary Cells Breast
35 chr1:184025400-184043800 Weak transcription Rectal Mucosa Donor 31 rectum
36 chr1:184026200-184037600 Weak transcription H9 Cell Line embryonic stem cell
37 chr1:184026400-184035800 Weak transcription Placenta Placenta
38 chr1:184026400-184044400 Weak transcription Primary T killer memory cells from peripheral blood blood
39 chr1:184026600-184037400 Weak transcription Brain Angular Gyrus brain
40 chr1:184026600-184043800 Weak transcription Hela-S3 cervix
41 chr1:184026600-184050400 Weak transcription Aorta Aorta
42 chr1:184026800-184041800 Weak transcription NHEK skin
43 chr1:184026800-184043600 Weak transcription Colon Smooth Muscle Colon
44 chr1:184026800-184044000 Weak transcription Primary T helper memory cells from peripheral blood 1 blood
45 chr1:184026800-184044400 Weak transcription Foreskin Fibroblast Primary Cells skin01 Skin
46 chr1:184026800-184052200 Weak transcription HepG2 liver
47 chr1:184027600-184036400 Weak transcription Primary B cells from peripheral blood blood
48 chr1:184027800-184037000 Strong transcription Primary Natural Killer cells fromperipheralblood blood
49 chr1:184028200-184035000 Strong transcription Primary B cells from cord blood blood
50 chr1:184029000-184043400 Weak transcription H1 Derived Mesenchymal Stem Cells ES cell derived

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Last update: Aug 31, 2015