Variant report

Variant	rs1034477
Chromosome Location	chr1:184114039-184114040
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:184113797..184115300-chr1:184117014..184119878,2	K562	blood:

Extended variants
information (count: 34 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:32)

rs_ID	r²[population]
rs10797941	1.00[ASN][1000 genomes]
rs10911511	0.81[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs11576332	1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[ASN][1000 genomes]
rs11582961	1.00[JPT][hapmap];0.88[ASN][1000 genomes]
rs11585756	0.83[AFR][1000 genomes];0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12086203	0.80[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12402790	1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[ASN][1000 genomes]
rs12403064	0.87[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12408961	0.94[ASN][1000 genomes]
rs12411231	0.94[ASN][1000 genomes]
rs12725276	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12729638	1.00[CEU][hapmap];1.00[JPT][hapmap];0.84[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12734950	0.88[ASN][1000 genomes]
rs12751711	1.00[JPT][hapmap];0.88[ASN][1000 genomes]
rs12759837	0.83[ASN][1000 genomes]
rs1409812	1.00[JPT][hapmap];0.88[ASN][1000 genomes]
rs16822379	1.00[JPT][hapmap];0.88[ASN][1000 genomes]
rs1926873	0.88[ASN][1000 genomes]
rs1991170	1.00[ASN][1000 genomes]
rs34010717	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34876045	0.88[ASN][1000 genomes]
rs35178058	0.83[AFR][1000 genomes];0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35514700	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35947721	0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4650654	1.00[ASN][1000 genomes]
rs56239295	0.88[ASN][1000 genomes]
rs58322431	0.84[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs61477737	0.84[AFR][1000 genomes];0.96[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs68130131	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73053551	0.87[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs765224	1.00[JPT][hapmap];0.88[ASN][1000 genomes]
rs765225	1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530079	chr1:183797938-184639971	Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
2	nsv1006655	chr1:183922288-184186677	Active TSS Flanking Active TSS Enhancers Bivalent Enhancer Strong transcription Weak transcription Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs1034477	C1orf19	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:184109600-184115600	Enhancers	Fetal Brain Male	brain
2	chr1:184111800-184114400	Enhancers	Fetal Muscle Leg	muscle
3	chr1:184112200-184114600	Enhancers	Fetal Brain Female	brain
4	chr1:184113000-184120000	Weak transcription	Primary monocytes fromperipheralblood	blood
5	chr1:184113000-184122000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
6	chr1:184113200-184119600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
7	chr1:184114000-184125800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived

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