Variant report

Variant	rs35947721
Chromosome Location	chr1:184134131-184134132
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr1:184133628..184134276-chr1:184191441..184192137,2	MCF-7	breast:
2	chr1:184115719..184117386-chr1:184131211..184134180,2	MCF-7	breast:
3	chr1:184127950..184130457-chr1:184133331..184135585,3	K562	blood:

Extended variants
information (count: 34 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:32)

rs_ID	r²[population]
rs1034477	0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10797941	1.00[ASN][1000 genomes]
rs10911511	0.97[EUR][1000 genomes]
rs11576332	0.88[ASN][1000 genomes]
rs11582961	0.88[ASN][1000 genomes]
rs11585756	0.85[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12086203	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12402790	0.88[ASN][1000 genomes]
rs12403064	0.86[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12408961	0.94[ASN][1000 genomes]
rs12411231	0.94[ASN][1000 genomes]
rs12725276	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12729638	0.95[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12734950	0.88[ASN][1000 genomes]
rs12751711	0.88[ASN][1000 genomes]
rs12759837	0.83[ASN][1000 genomes]
rs1409812	0.88[ASN][1000 genomes]
rs16822379	0.88[ASN][1000 genomes]
rs1926873	0.88[ASN][1000 genomes]
rs1991170	1.00[ASN][1000 genomes]
rs34010717	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34876045	0.88[ASN][1000 genomes]
rs35178058	0.85[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35514700	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4650654	1.00[ASN][1000 genomes]
rs56239295	0.88[ASN][1000 genomes]
rs58322431	0.83[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs61477737	0.95[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs68130131	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73053551	0.86[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs765224	0.88[ASN][1000 genomes]
rs765225	0.88[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530079	chr1:183797938-184639971	Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
2	nsv1006655	chr1:183922288-184186677	Active TSS Flanking Active TSS Enhancers Bivalent Enhancer Strong transcription Weak transcription Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs35947721	C1orf19	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:184127600-184135800	Enhancers	NHDF-Ad	bronchial
2	chr1:184128400-184135600	Enhancers	Primary monocytes fromperipheralblood	blood
3	chr1:184129800-184134200	Enhancers	NHLF	lung
4	chr1:184130200-184135200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
5	chr1:184131200-184134200	Enhancers	Fetal Muscle Leg	muscle
6	chr1:184131800-184134600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
7	chr1:184131800-184135200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
8	chr1:184132600-184134200	Enhancers	Fetal Heart	heart
9	chr1:184133200-184135000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
10	chr1:184133400-184135400	Enhancers	Primary neutrophils fromperipheralblood	blood
11	chr1:184133600-184134400	Flanking Active TSS	GM12878-XiMat	blood
12	chr1:184133600-184134600	Enhancers	Rectal Mucosa Donor 31	rectum
13	chr1:184133600-184135200	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
14	chr1:184133800-184134200	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
15	chr1:184133800-184135200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
16	chr1:184133800-184135800	Enhancers	Primary hematopoietic stem cells short term culture	blood
17	chr1:184134000-184134200	Enhancers	Primary B cells from cord blood	blood
18	chr1:184134000-184138000	Weak transcription	Left Ventricle	heart

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links