Variant report

Variant	rs35178058
Chromosome Location	chr1:184112428-184112429
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:184044361..184045233-chr1:184112241..184112801,2	MCF-7	breast:

Extended variants
information (count: 34 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:32)

rs_ID	r²[population]
rs1034477	0.83[AFR][1000 genomes];0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10797941	1.00[ASN][1000 genomes]
rs10911511	0.94[EUR][1000 genomes]
rs11576332	0.88[ASN][1000 genomes]
rs11582961	0.88[ASN][1000 genomes]
rs11585756	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12086203	0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12402790	0.88[ASN][1000 genomes]
rs12403064	0.83[AMR][1000 genomes];0.89[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12408961	0.94[ASN][1000 genomes]
rs12411231	0.94[ASN][1000 genomes]
rs12725276	0.88[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12729638	0.86[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12734950	0.88[ASN][1000 genomes]
rs12751711	0.88[ASN][1000 genomes]
rs12759837	0.83[ASN][1000 genomes]
rs1409812	0.88[ASN][1000 genomes]
rs16822379	0.88[ASN][1000 genomes]
rs1926873	0.88[ASN][1000 genomes]
rs1991170	1.00[ASN][1000 genomes]
rs34010717	0.86[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34876045	0.88[ASN][1000 genomes]
rs35514700	0.86[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35947721	0.85[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4650654	1.00[ASN][1000 genomes]
rs56239295	0.88[ASN][1000 genomes]
rs58322431	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs61477737	0.86[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs68130131	0.83[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73053551	0.83[AMR][1000 genomes];0.89[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs765224	0.88[ASN][1000 genomes]
rs765225	0.88[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530079	chr1:183797938-184639971	Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
2	nsv1006655	chr1:183922288-184186677	Active TSS Flanking Active TSS Enhancers Bivalent Enhancer Strong transcription Weak transcription Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs35178058	C1orf19	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:184109600-184115600	Enhancers	Fetal Brain Male	brain
2	chr1:184111800-184113800	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
3	chr1:184111800-184113800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
4	chr1:184111800-184114400	Enhancers	Fetal Muscle Leg	muscle
5	chr1:184112200-184113200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
6	chr1:184112200-184113200	Enhancers	Skeletal Muscle Male	skeletal muscle
7	chr1:184112200-184113200	Enhancers	Stomach Smooth Muscle	stomach
8	chr1:184112200-184114600	Enhancers	Fetal Brain Female	brain
9	chr1:184112400-184112600	Enhancers	HSMMtube	muscle
10	chr1:184112400-184112600	Enhancers	NHLF	lung
11	chr1:184112400-184112600	Enhancers	Osteobl	bone
12	chr1:184112400-184113000	Enhancers	Primary hematopoietic stem cells short term culture	blood
13	chr1:184112400-184113000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
14	chr1:184112400-184113000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
15	chr1:184112400-184113200	Enhancers	Left Ventricle	heart
16	chr1:184112400-184113200	Enhancers	NHDF-Ad	bronchial
17	chr1:184112400-184113400	Enhancers	Fetal Heart	heart
18	chr1:184112400-184113400	Enhancers	Skeletal Muscle Female	skeletal muscle

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