Variant report
| Variant | rs12083933 |
|---|---|
| Chromosome Location | chr1:184304868-184304869 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:1)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
(count:1 , 50 per page) page:
1
| No. | lncRNA name | Chromosome Location | lncRNA alias |
|---|---|---|---|
| 1 | lnc-C1orf21-4 | chr1:184304792-184305081 | NONHSAT008383 |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:45)
| rs_ID | r2[population] |
|---|---|
| rs10911556 | 1.00[CHD][hapmap] |
| rs10911582 | 0.81[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs12082456 | 1.00[ASN][1000 genomes] |
| rs12096575 | 1.00[CHD][hapmap] |
| rs12723932 | 0.87[AFR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs12726204 | 1.00[CHD][hapmap];1.00[ASN][1000 genomes] |
| rs12727991 | 1.00[ASN][1000 genomes] |
| rs12735902 | 1.00[ASN][1000 genomes] |
| rs12746499 | 1.00[CHD][hapmap];1.00[ASN][1000 genomes] |
| rs12756319 | 1.00[ASN][1000 genomes] |
| rs13374609 | 1.00[ASN][1000 genomes] |
| rs1547608 | 1.00[ASN][1000 genomes] |
| rs1930293 | 1.00[CHD][hapmap] |
| rs34312759 | 1.00[ASN][1000 genomes] |
| rs34579903 | 1.00[ASN][1000 genomes] |
| rs34591137 | 1.00[ASN][1000 genomes] |
| rs34712320 | 1.00[ASN][1000 genomes] |
| rs34946851 | 1.00[ASN][1000 genomes] |
| rs35021091 | 1.00[ASN][1000 genomes] |
| rs35040136 | 1.00[ASN][1000 genomes] |
| rs35350002 | 1.00[ASN][1000 genomes] |
| rs35414247 | 1.00[ASN][1000 genomes] |
| rs35430213 | 1.00[ASN][1000 genomes] |
| rs35782682 | 1.00[ASN][1000 genomes] |
| rs35901887 | 1.00[ASN][1000 genomes] |
| rs35999930 | 1.00[ASN][1000 genomes] |
| rs3886022 | 1.00[ASN][1000 genomes] |
| rs4275415 | 1.00[ASN][1000 genomes] |
| rs4332324 | 1.00[ASN][1000 genomes] |
| rs4354508 | 1.00[ASN][1000 genomes] |
| rs4390140 | 0.84[AFR][1000 genomes];1.00[ASN][1000 genomes] |
| rs4466608 | 1.00[ASN][1000 genomes] |
| rs4650665 | 1.00[ASN][1000 genomes] |
| rs4651204 | 0.81[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs4651212 | 1.00[ASN][1000 genomes] |
| rs59079733 | 1.00[ASN][1000 genomes] |
| rs66916459 | 1.00[ASN][1000 genomes] |
| rs71634105 | 0.84[AFR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs71634106 | 1.00[ASN][1000 genomes] |
| rs71634108 | 1.00[ASN][1000 genomes] |
| rs71634109 | 1.00[ASN][1000 genomes] |
| rs74131654 | 1.00[ASN][1000 genomes] |
| rs74131659 | 1.00[ASN][1000 genomes] |
| rs7531736 | 1.00[ASN][1000 genomes] |
| rs9970629 | 1.00[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv530079 | chr1:183797938-184639971 | Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 21 gene(s) | inside rSNPs | diseases |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
